| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aggacaa | 7 | ||
| MIMAT0034827 | efu-miR-9225 | 1 | ....... | 7 | 100 |
| MIMAT0032831 | cel-miR-8207-5p | 7 | ....... | 1 | 100 |
| MIMAT0030822 | prd-miR-7957c-5p | 8 | ....... | 2 | 100 |
| MIMAT0026383 | bma-miR-5881b | 1 | ....... | 7 | 100 |
| MIMAT0027699 | mmu-miR-6899-3p | 7 | ....... | 1 | 100 |
| MIMAT0025697 | gga-miR-6603-3p | 2 | ....... | 8 | 100 |
| MIMAT0021346 | mtr-miR5286a | 2 | ....... | 8 | 100 |
| MIMAT0018565 | ame-miR-3786 | 8 | ....... | 2 | 100 |
| MIMAT0017950 | hsa-miR-2355-3p | 8 | ....... | 2 | 100 |
| MIMAT0011892 | bta-miR-2355-3p | 8 | ....... | 2 | 100 |
| MIMAT0004457 | mdv2-miR-M17-3p | 2 | ....... | 8 | 100 |
| MIMAT0035320 | gsa-miR-71c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0034889 | efu-miR-9189b | 6 | ......_ | 1 | 85 |
| MIMAT0034866 | efu-miR-9249 | 3 | ......_ | 8 | 85 |
| MIMAT0034582 | eca-miR-9040 | 8 | ......_ | 3 | 85 |
| MIMAT0034408 | cfa-miR-8898 | 3 | ......_ | 8 | 85 |
| MIMAT0034235 | gra-miR7486c | 7 | _...... | 2 | 85 |
| MIMAT0034147 | gra-miR8735 | 3 | _...... | 8 | 85 |
| MIMAT0034079 | gra-miR8698 | 3 | _...... | 8 | 85 |
| MIMAT0033752 | pxy-miR-8521a | 7 | _...... | 2 | 85 |
| MIMAT0033751 | pxy-miR-8521b | 7 | _...... | 2 | 85 |
| MIMAT0032811 | cel-miR-8199-5p | 3 | _...... | 8 | 85 |
| MIMAT0031007 | hsa-miR-8080 | 3 | ......_ | 8 | 85 |
| MIMAT0030670 | prd-miR-7917-5p | 6 | _...... | 1 | 85 |
| MIMAT0029015 | oan-miR-7432-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028997 | oan-miR-7423-3p | 2 | _...... | 7 | 85 |
| MIMAT0028298 | mml-miR-7177-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028290 | mml-miR-7175-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028132 | mmu-miR-7117-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027797 | mmu-miR-6948-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027605 | hsa-miR-6852-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025773 | gga-miR-6671-5p | 6 | ......_ | 1 | 85 |
| MIMAT0025709 | gga-miR-6614-3p | 3 | ......_ | 8 | 85 |
| MIMAT0024735 | nta-miR6146b | 7 | _...... | 2 | 85 |
| MIMAT0024734 | nta-miR6146a | 7 | _...... | 2 | 85 |
| MIMAT0024019 | cgr-miR-6092 | 2 | _...... | 7 | 85 |
| MIMAT0023093 | tur-miR-5735-3p | 2 | _...... | 7 | 85 |
| MIMAT0022430 | ath-miR5657 | 2 | _...... | 7 | 85 |
| MIMAT0021391 | rmi-miR-5317b | 8 | _...... | 3 | 85 |
| MIMAT0021027 | hsa-miR-5004-5p | 3 | ......_ | 8 | 85 |
| MIMAT0021020 | hsa-miR-5000-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020490 | bfl-miR-4898 | 8 | ......_ | 3 | 85 |
| MIMAT0019708 | hsa-miR-4646-3p | 7 | _...... | 2 | 85 |
| MIMAT0019409 | pma-miR-26a-1-3p | 8 | ......_ | 3 | 85 |
| MIMAT0018952 | hsa-miR-4436a | 3 | ......_ | 8 | 85 |
| MIMAT0018183 | hsa-miR-3909 | 6 | ......_ | 1 | 85 |
| MIMAT0016564 | cin-miR-4037-3p | 2 | _...... | 7 | 85 |
| MIMAT0017849 | rno-miR-3569 | 3 | ......_ | 8 | 85 |
| MIMAT0017777 | esi-miR3462-5p | 6 | _...... | 1 | 85 |
| MIMAT0014698 | hsv2-miR-H11-3p | 3 | ......_ | 8 | 85 |
| MIMAT0014688 | hsv1-miR-H11 | 3 | ......_ | 8 | 85 |
| MIMAT0013809 | osa-miR2863a | 6 | _...... | 1 | 85 |
| MIMAT0012016 | bta-miR-2441 | 3 | ......_ | 8 | 85 |
| MIMAT0011804 | bta-miR-2296 | 2 | _...... | 7 | 85 |
| MIMAT0007452 | gga-miR-1590 | 3 | _...... | 8 | 85 |
| MIMAT0006992 | oan-miR-26-1-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005388 | cre-miR1149.1 | 3 | _...... | 8 | 85 |
| MIMAT0004862 | mmu-miR-877-3p | 6 | ......_ | 1 | 85 |
| MIMAT0002244 | mml-miR-133a | 6 | _...... | 1 | 85 |
| MIMAT0002242 | ppy-miR-133a | 6 | _...... | 1 | 85 |
| MIMAT0020916 | osa-miR169f.2 | 3 | ......_ | 8 | 85 |
