| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aggctgg | 7 | ||
| MIMAT0036933 | oha-miR-456 | 2 | ....... | 8 | 100 |
| MIMAT0034472 | eca-miR-8943 | 1 | ....... | 7 | 100 |
| MIMAT0032709 | ssa-miR-92a-3-5p | 1 | ....... | 7 | 100 |
| MIMAT0032646 | ssa-miR-456-3p | 2 | ....... | 8 | 100 |
| MIMAT0029872 | mmu-miR-7679-5p | 1 | ....... | 7 | 100 |
| MIMAT0029514 | ipu-miR-456 | 2 | ....... | 8 | 100 |
| MIMAT0027599 | hsa-miR-6849-3p | 8 | ....... | 2 | 100 |
| MIMAT0025316 | prv-miR-LLT11b | 1 | ....... | 7 | 100 |
| MIMAT0025315 | prv-miR-LLT11a | 1 | ....... | 7 | 100 |
| MIMAT0025074 | rno-miR-6333 | 2 | ....... | 8 | 100 |
| MIMAT0024009 | cgr-miR-92a-5p | 1 | ....... | 7 | 100 |
| MIMAT0021966 | aca-miR-456 | 2 | ....... | 8 | 100 |
| MIMAT0021204 | mtr-miR2592bg | 1 | ....... | 7 | 100 |
| MIMAT0021203 | mtr-miR2592bf | 1 | ....... | 7 | 100 |
| MIMAT0021202 | mtr-miR2592be | 1 | ....... | 7 | 100 |
| MIMAT0021201 | mtr-miR2592bd | 1 | ....... | 7 | 100 |
| MIMAT0021200 | mtr-miR2592bc | 1 | ....... | 7 | 100 |
| MIMAT0021199 | mtr-miR2592bb | 1 | ....... | 7 | 100 |
| MIMAT0021198 | mtr-miR2592ba | 1 | ....... | 7 | 100 |
| MIMAT0021197 | mtr-miR2592az | 1 | ....... | 7 | 100 |
| MIMAT0021196 | mtr-miR2592ay | 1 | ....... | 7 | 100 |
| MIMAT0021195 | mtr-miR2592ax | 1 | ....... | 7 | 100 |
| MIMAT0021194 | mtr-miR2592aw | 1 | ....... | 7 | 100 |
| MIMAT0021193 | mtr-miR2592av | 1 | ....... | 7 | 100 |
| MIMAT0021192 | mtr-miR2592au | 1 | ....... | 7 | 100 |
| MIMAT0021191 | mtr-miR2592at | 1 | ....... | 7 | 100 |
| MIMAT0021190 | mtr-miR2592as | 1 | ....... | 7 | 100 |
| MIMAT0021189 | mtr-miR2592ar | 1 | ....... | 7 | 100 |
| MIMAT0021188 | mtr-miR2592aq | 1 | ....... | 7 | 100 |
| MIMAT0021187 | mtr-miR2592ap | 1 | ....... | 7 | 100 |
| MIMAT0019554 | pma-miR-456 | 2 | ....... | 8 | 100 |
| MIMAT0019041 | hsa-miR-4505 | 1 | ....... | 7 | 100 |
| MIMAT0018945 | hsa-miR-4430 | 1 | ....... | 7 | 100 |
| MIMAT0014874 | mmu-miR-3083-5p | 1 | ....... | 7 | 100 |
| MIMAT0014469 | tgu-miR-456-3p | 2 | ....... | 8 | 100 |
| MIMAT0012078 | bta-miR-664a | 2 | ....... | 8 | 100 |
| MIMAT0009386 | bta-miR-940 | 2 | ....... | 8 | 100 |
| MIMAT0003777 | gga-miR-456-3p | 2 | ....... | 8 | 100 |
| MIMAT0001882 | dre-miR-456 | 2 | ....... | 8 | 100 |
| MIMAT0036244 | chi-miR-485-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035736 | rno-miR-1956-3p | 2 | _...... | 7 | 85 |
| MIMAT0035715 | mmu-miR-3552 | 1 | ......_ | 6 | 85 |
| MIMAT0035089 | efu-miR-204 | 1 | _...... | 6 | 85 |
| MIMAT0035079 | efu-miR-9331 | 3 | ......_ | 8 | 85 |
| MIMAT0034704 | eca-miR-1911 | 8 | _...... | 3 | 85 |
| MIMAT0034482 | eca-miR-8953 | 3 | _...... | 8 | 85 |
| MIMAT0033431 | str-miR-8385-3p | 2 | _...... | 7 | 85 |
| MIMAT0033388 | str-miR-7880s-5p | 2 | _...... | 7 | 85 |
| MIMAT0033386 | str-miR-7880r-5p | 2 | _...... | 7 | 85 |
| MIMAT0033378 | str-miR-7880q-5p | 1 | _...... | 6 | 85 |
| MIMAT0033311 | str-miR-7880c-5p | 2 | _...... | 7 | 85 |
| MIMAT0031698 | bbe-miR-4874-3p | 3 | _...... | 8 | 85 |
| MIMAT0031177 | hsa-miR-7974 | 1 | ......_ | 6 | 85 |
| MIMAT0030718 | prd-miR-7933-5p | 8 | ......_ | 3 | 85 |
| MIMAT0030281 | bdi-miR7766-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029819 | mmu-miR-7656-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029799 | mmu-miR-7648-3p | 3 | _...... | 8 | 85 |
| MIMAT0029572 | ipu-miR-7573 | 1 | ......_ | 6 | 85 |
| MIMAT0029551 | ipu-miR-7555 | 8 | _...... | 3 | 85 |
| MIMAT0028964 | oan-miR-7409-5p | 3 | _...... | 8 | 85 |
| MIMAT0028798 | mdo-miR-7374c-5p | 6 | _...... | 1 | 85 |
| MIMAT0028727 | mdo-miR-7357-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027974 | mmu-miR-7035-5p | 1 | _...... | 6 | 85 |
| MIMAT0027780 | mmu-miR-6940-5p | 3 | _...... | 8 | 85 |
| MIMAT0027668 | hsa-miR-6884-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027655 | hsa-miR-6877-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027587 | hsa-miR-6842-3p | 3 | _...... | 8 | 85 |
| MIMAT0027346 | blv-miR-B1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027345 | hsa-miR-6720-5p | 8 | _...... | 3 | 85 |
| MIMAT0025714 | gga-miR-6618-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025587 | mmu-miR-3473e | 2 | _...... | 7 | 85 |
| MIMAT0025481 | hsa-miR-6512-3p | 8 | _...... | 3 | 85 |
| MIMAT0024624 | mml-miR-6131 | 1 | _...... | 6 | 85 |
| MIMAT0024615 | hsa-miR-6131 | 1 | _...... | 6 | 85 |
| MIMAT0024605 | ptr-miR-6131 | 1 | _...... | 6 | 85 |
| MIMAT0024102 | ggo-miR-485 | 3 | ......_ | 8 | 85 |
| MIMAT0023994 | cgr-miR-664-5p | 3 | _...... | 8 | 85 |
| MIMAT0023397 | hco-miR-5911c | 3 | ......_ | 8 | 85 |
| MIMAT0023252 | hsa-miR-5787 | 2 | _...... | 7 | 85 |
| MIMAT0022831 | sha-miR-363 | 2 | _...... | 7 | 85 |
| MIMAT0023065 | tur-miR-5733-3p | 1 | ......_ | 6 | 85 |
| MIMAT0022297 | hsa-miR-5589-5p | 1 | _...... | 6 | 85 |
| MIMAT0022143 | osa-miR5510 | 1 | ......_ | 6 | 85 |
| MIMAT0022129 | osa-miR5496 | 6 | _...... | 1 | 85 |
| MIMAT0020655 | bdi-miR169i | 6 | _...... | 1 | 85 |
| MIMAT0021021 | hsa-miR-5001-5p | 3 | _...... | 8 | 85 |
| MIMAT0020454 | bfl-miR-4874-3p | 3 | _...... | 8 | 85 |
| MIMAT0019782 | hsa-miR-4691-3p | 6 | _...... | 1 | 85 |
| MIMAT0020367 | mmu-miR-3473b | 2 | _...... | 7 | 85 |
| MIMAT0019312 | oar-miR-485-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019033 | hsa-miR-4498 | 3 | _...... | 8 | 85 |
| MIMAT0019027 | hsa-miR-4492 | 3 | _...... | 8 | 85 |
| MIMAT0018985 | hsa-miR-3135b | 1 | _...... | 6 | 85 |
| MIMAT0018072 | hsa-miR-3652 | 2 | _...... | 7 | 85 |
| MIMAT0016848 | hsa-miR-4293 | 6 | ......_ | 1 | 85 |
| MIMAT0017813 | rno-miR-3552 | 1 | ......_ | 6 | 85 |
| MIMAT0016062 | ppy-miR-621 | 1 | _...... | 6 | 85 |
| MIMAT0016046 | ppy-miR-604 | 1 | ......_ | 6 | 85 |
| MIMAT0015902 | ppy-miR-485-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015078 | hsa-miR-3194-5p | 8 | _...... | 3 | 85 |
| MIMAT0013159 | eca-miR-485-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012957 | eca-miR-1905b | 8 | _...... | 3 | 85 |
| MIMAT0012815 | ptr-miR-762 | 3 | _...... | 8 | 85 |
| MIMAT0012809 | ptr-miR-604 | 1 | ......_ | 6 | 85 |
| MIMAT0012791 | mml-miR-762 | 3 | _...... | 8 | 85 |
| MIMAT0017353 | mmu-miR-664-5p | 3 | _...... | 8 | 85 |
| MIMAT0011998 | bta-miR-2428 | 2 | _...... | 7 | 85 |
| MIMAT0011962 | bta-miR-449d | 3 | ......_ | 8 | 85 |
| MIMAT0011925 | bta-miR-2379 | 1 | ......_ | 6 | 85 |
| MIMAT0011872 | bta-miR-2338 | 1 | ......_ | 6 | 85 |
| MIMAT0009749 | spu-miR-2008 | 8 | ......_ | 3 | 85 |
| MIMAT0009738 | sko-miR-2008 | 8 | ......_ | 3 | 85 |
| MIMAT0009435 | mmu-miR-1962 | 3 | ......_ | 8 | 85 |
| MIMAT0009328 | bta-miR-485 | 3 | ......_ | 8 | 85 |
| MIMAT0006725 | cfa-miR-485 | 3 | ......_ | 8 | 85 |
| MIMAT0006429 | mml-miR-563 | 1 | ......_ | 6 | 85 |
| MIMAT0006342 | mml-miR-485-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026843 | mml-miR-204-3p | 1 | _...... | 6 | 85 |
| MIMAT0007595 | gga-miR-1703-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007593 | gga-miR-1701 | 1 | _...... | 6 | 85 |
| MIMAT0007590 | gga-miR-1698 | 3 | ......_ | 8 | 85 |
| MIMAT0007475 | gga-miR-1609 | 1 | ......_ | 6 | 85 |
| MIMAT0007451 | gga-miR-1589 | 6 | ......_ | 1 | 85 |
| MIMAT0007449 | gga-miR-1587 | 2 | _...... | 7 | 85 |
| MIMAT0015253 | cin-miR-92a-5p | 2 | _...... | 7 | 85 |
| MIMAT0006946 | oan-miR-1353 | 6 | _...... | 1 | 85 |
| MIMAT0006875 | oan-miR-1343-3p | 2 | _...... | 7 | 85 |
| MIMAT0005008 | pta-miR948 | 3 | ......_ | 8 | 85 |
| MIMAT0032012 | dre-miR-735-5p | 1 | _...... | 6 | 85 |
| MIMAT0003458 | mmu-miR-681 | 6 | ......_ | 1 | 85 |
| MIMAT0003892 | mmu-miR-762 | 3 | _...... | 8 | 85 |
| MIMAT0010313 | hsa-miR-762 | 3 | _...... | 8 | 85 |
| MIMAT0017229 | rno-miR-664-2-5p | 3 | _...... | 8 | 85 |
| MIMAT0017228 | rno-miR-664-1-5p | 3 | _...... | 8 | 85 |
| MIMAT0003272 | hsa-miR-604 | 1 | ......_ | 6 | 85 |
| MIMAT0003203 | rno-miR-485-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003128 | mmu-miR-485-5p | 3 | ......_ | 8 | 85 |
| MIMAT0002175 | hsa-miR-485-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031924 | dre-miR-204-3p | 1 | _...... | 6 | 85 |
