| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtagtc | 7 | ||
| MIMAT0034090 | gra-miR8703c | 1 | ....... | 7 | 100 |
| MIMAT0034089 | gra-miR8703b | 1 | ....... | 7 | 100 |
| MIMAT0034088 | gra-miR8703a | 1 | ....... | 7 | 100 |
| MIMAT0027743 | mmu-miR-6921-3p | 8 | ....... | 2 | 100 |
| MIMAT0022998 | rgl-miR5573 | 2 | ....... | 8 | 100 |
| MIMAT0019508 | pma-miR-199b-3p | 2 | ....... | 8 | 100 |
| MIMAT0019506 | pma-miR-199a-3p | 2 | ....... | 8 | 100 |
| MIMAT0007583 | gga-miR-199b | 2 | ....... | 8 | 100 |
| MIMAT0036792 | oha-miR-199b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036790 | oha-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036529 | tch-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036479 | tch-miR-199b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036041 | chi-miR-199c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036039 | chi-miR-199b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036037 | chi-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035860 | bra-miR860-5p | 3 | _...... | 8 | 85 |
| MIMAT0035586 | dvi-miR-968-5p | 3 | ......_ | 8 | 85 |
| MIMAT0034638 | eca-miR-9093 | 3 | _...... | 8 | 85 |
| MIMAT0033203 | ppc-miR-8329-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032461 | ssa-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030040 | oar-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029655 | cbn-miR-7616 | 2 | _...... | 7 | 85 |
| MIMAT0031093 | ipu-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026256 | ccr-miR-199-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028059 | mmu-miR-7076-3p | 7 | _...... | 2 | 85 |
| MIMAT0025441 | pol-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0024265 | ggo-miR-3129 | 3 | ......_ | 8 | 85 |
| MIMAT0024041 | ptr-miR-3129 | 3 | ......_ | 8 | 85 |
| MIMAT0023837 | cgr-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0023505 | hco-miR-5989 | 1 | _...... | 6 | 85 |
| MIMAT0022785 | sha-miR-199a | 3 | ......_ | 8 | 85 |
| MIMAT0022539 | ola-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021381 | isc-miR-5310 | 2 | _...... | 7 | 85 |
| MIMAT0020583 | osa-miR5083 | 7 | _...... | 2 | 85 |
| MIMAT0020460 | bfl-miR-4877 | 1 | ......_ | 6 | 85 |
| MIMAT0018015 | vvi-miR3626-5p | 2 | _...... | 7 | 85 |
| MIMAT0016048 | ppy-miR-606 | 8 | ......_ | 3 | 85 |
| MIMAT0015793 | ppy-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0014992 | hsa-miR-3129-5p | 3 | ......_ | 8 | 85 |
| MIMAT0014761 | api-miR-3025 | 1 | ......_ | 6 | 85 |
| MIMAT0014617 | tgu-miR-199-3p | 3 | ......_ | 8 | 85 |
| MIMAT0013875 | ssc-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0013781 | eca-miR-199b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012961 | eca-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012810 | ptr-miR-606 | 8 | ......_ | 3 | 85 |
| MIMAT0012441 | dsi-miR-968-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012245 | dps-miR-968-5p | 3 | ......_ | 8 | 85 |
| MIMAT0011634 | crm-miR-64a-3p | 7 | _...... | 2 | 85 |
| MIMAT0011457 | cel-miR-2218b-5p | 7 | _...... | 2 | 85 |
| MIMAT0008062 | ptr-miR-199b | 3 | ......_ | 8 | 85 |
| MIMAT0009192 | ptr-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0006740 | cfa-miR-1844 | 8 | _...... | 3 | 85 |
| MIMAT0006642 | cfa-miR-199 | 3 | ......_ | 8 | 85 |
| MIMAT0006232 | mml-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0006109 | cin-miR-199-3p | 3 | ......_ | 8 | 85 |
| MIMAT0007173 | oan-miR-199-3p | 3 | ......_ | 8 | 85 |
| MIMAT0007056 | oan-miR-222b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005356 | tae-miR1121 | 1 | ......_ | 6 | 85 |
| MIMAT0005180 | ppt-miR1061-3p | 3 | ......_ | 8 | 85 |
| MIMAT0005484 | dme-miR-968-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026678 | mdo-miR-199b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003746 | bta-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003274 | hsa-miR-606 | 8 | ......_ | 3 | 85 |
| MIMAT0015218 | kshv-miR-K12-5-5p | 3 | _...... | 8 | 85 |
| MIMAT0002096 | ptc-miR480 | 6 | ......_ | 1 | 85 |
| MIMAT0031922 | dre-miR-199-3-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004738 | rno-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004667 | mmu-miR-199b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000610 | rno-miR-352 | 3 | ......_ | 8 | 85 |
| MIMAT0000507 | cbr-miR-252 | 3 | ......_ | 8 | 85 |
| MIMAT0004563 | hsa-miR-199b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000232 | hsa-miR-199a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0000230 | mmu-miR-199a-3p | 3 | ......_ | 8 | 85 |
