| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agtagttg | 8 | ||
| MIMAT0030261 | bdi-miR7757-3p.1 | 2 | _....... | 8 | 87 |
| MIMAT0029912 | mml-miR-5697-5p | 2 | ......._ | 8 | 87 |
| MIMAT0028279 | mml-miR-4703-3p | 1 | _....... | 7 | 87 |
| MIMAT0022396 | ath-miR5636 | 2 | _....... | 8 | 87 |
| MIMAT0019802 | hsa-miR-4703-3p | 2 | _....... | 8 | 87 |
| MIMAT0016169 | ppy-miR-1244 | 2 | ......._ | 8 | 87 |
| MIMAT0016048 | ppy-miR-606 | 8 | ......._ | 2 | 87 |
| MIMAT0012810 | ptr-miR-606 | 8 | ......._ | 2 | 87 |
| MIMAT0012190 | bdi-miR1127 | 7 | ......._ | 1 | 87 |
| MIMAT0007970 | ptr-miR-1244 | 2 | ......._ | 8 | 87 |
| MIMAT0005896 | hsa-miR-1244 | 2 | ......._ | 8 | 87 |
| MIMAT0003274 | hsa-miR-606 | 8 | ......._ | 2 | 87 |
| MIMAT0029820 | mmu-miR-7657-5p | 1 | .a...... | 8 | 87 |
| MIMAT0020460 | bfl-miR-4877 | 1 | ......a. | 8 | 87 |
| MIMAT0013799 | bmo-miR-2859 | 8 | .a...... | 1 | 87 |
| MIMAT0036928 | oha-miR-449c-3p | 7 | __...... | 2 | 75 |
| MIMAT0036792 | oha-miR-199b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036790 | oha-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036529 | tch-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036479 | tch-miR-199b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036041 | chi-miR-199c-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036039 | chi-miR-199b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036037 | chi-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035586 | dvi-miR-968-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035383 | nve-miR-9424a | 3 | __...... | 8 | 75 |
| MIMAT0034090 | gra-miR8703c | 1 | ......__ | 6 | 75 |
| MIMAT0034089 | gra-miR8703b | 1 | ......__ | 6 | 75 |
| MIMAT0034088 | gra-miR8703a | 1 | ......__ | 6 | 75 |
| MIMAT0033674 | sma-miR-8476-3p | 1 | __...... | 6 | 75 |
| MIMAT0033534 | sma-miR-8415-5p | 1 | __...... | 6 | 75 |
| MIMAT0033203 | ppc-miR-8329-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033033 | ppc-miR-8270-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032826 | cel-miR-8196b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0032806 | cel-miR-8196a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032782 | ath-miR8183 | 3 | __...... | 8 | 75 |
| MIMAT0032461 | ssa-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031700 | bbe-miR-4877-3p | 2 | ......__ | 7 | 75 |
| MIMAT0031672 | bbe-miR-34b-3p | 8 | __...... | 3 | 75 |
| MIMAT0030205 | bdi-miR7717c-3p | 2 | __...... | 7 | 75 |
| MIMAT0030040 | oar-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0029796 | mmu-miR-7647-5p | 6 | _......_ | 1 | 75 |
| MIMAT0031093 | ipu-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028345 | mml-miR-549b-3p | 8 | __...... | 3 | 75 |
| MIMAT0028291 | mml-miR-7175-3p | 8 | __...... | 3 | 75 |
| MIMAT0026256 | ccr-miR-199-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028104 | ddi-miR-7101 | 2 | __...... | 7 | 75 |
| MIMAT0027743 | mmu-miR-6921-3p | 8 | ......__ | 3 | 75 |
| MIMAT0025441 | pol-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0024265 | ggo-miR-3129 | 3 | ......__ | 8 | 75 |
| MIMAT0024041 | ptr-miR-3129 | 3 | ......__ | 8 | 75 |
| MIMAT0023837 | cgr-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0022785 | sha-miR-199a | 3 | ......__ | 8 | 75 |
| MIMAT0022539 | ola-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0022998 | rgl-miR5573 | 2 | ......__ | 7 | 75 |
| MIMAT0022195 | cel-miR-5552-5p | 2 | _......_ | 7 | 75 |
| MIMAT0022015 | aca-miR-449c-3p | 7 | __...... | 2 | 75 |
| MIMAT0021459 | asu-miR-49-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020289 | ssp-miR1128 | 7 | ......__ | 2 | 75 |
| MIMAT0020511 | dme-miR-4917-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019508 | pma-miR-199b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019506 | pma-miR-199a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0018311 | gma-miR4396 | 2 | _......_ | 7 | 75 |
| MIMAT0018829 | tca-miR-3868-3p | 8 | __...... | 3 | 75 |
| MIMAT0018642 | tca-miR-3810-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016667 | cin-miR-4090-3p | 3 | _......_ | 8 | 75 |
| MIMAT0015793 | ppy-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015412 | bmo-miR-3230 | 2 | ......__ | 7 | 75 |
| MIMAT0015392 | bmo-miR-3213-5p | 7 | ......__ | 2 | 75 |
| MIMAT0014992 | hsa-miR-3129-5p | 3 | ......__ | 8 | 75 |
| MIMAT0014761 | api-miR-3025 | 1 | ......__ | 6 | 75 |
| MIMAT0014617 | tgu-miR-199-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016946 | rlcv-miR-rL1-23-3p | 2 | __...... | 7 | 75 |
| MIMAT0017383 | ssc-miR-708-3p | 6 | __...... | 1 | 75 |
| MIMAT0013875 | ssc-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013781 | eca-miR-199b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0012961 | eca-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026952 | mml-miR-708-3p | 6 | __...... | 1 | 75 |
| MIMAT0012514 | dsi-miR-982b | 6 | _......_ | 1 | 75 |
| MIMAT0012441 | dsi-miR-968-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012245 | dps-miR-968-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012074 | bta-miR-2482 | 1 | _......_ | 6 | 75 |
| MIMAT0011455 | cel-miR-2218a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0010131 | ebv-miR-BART21-3p | 2 | __...... | 7 | 75 |
| MIMAT0010002 | bfl-miR-34b-3p | 8 | __...... | 3 | 75 |
| MIMAT0009421 | mmu-miR-669o-5p | 1 | __...... | 6 | 75 |
| MIMAT0008062 | ptr-miR-199b | 3 | ......__ | 8 | 75 |
| MIMAT0009192 | ptr-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0006642 | cfa-miR-199 | 3 | ......__ | 8 | 75 |
| MIMAT0006232 | mml-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007643 | gga-miR-1740-5p | 2 | _......_ | 7 | 75 |
| MIMAT0007583 | gga-miR-199b | 2 | ......__ | 7 | 75 |
| MIMAT0007511 | gga-miR-1638 | 1 | _......_ | 6 | 75 |
| MIMAT0006109 | cin-miR-199-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007173 | oan-miR-199-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007056 | oan-miR-222b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0005363 | tae-miR1128 | 7 | ......__ | 2 | 75 |
| MIMAT0005356 | tae-miR1121 | 1 | ......__ | 6 | 75 |
| MIMAT0005332 | rno-miR-708-3p | 6 | __...... | 1 | 75 |
| MIMAT0005180 | ppt-miR1061-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005484 | dme-miR-968-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004927 | hsa-miR-708-3p | 6 | __...... | 1 | 75 |
| MIMAT0026678 | mdo-miR-199b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003997 | sme-miR-125a-3p | 1 | _......_ | 6 | 75 |
| MIMAT0003746 | bta-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003498 | mmu-miR-708-3p | 6 | __...... | 1 | 75 |
| MIMAT0003479 | mmu-miR-669c-5p | 2 | __...... | 7 | 75 |
| MIMAT0002096 | ptc-miR480 | 6 | ......__ | 1 | 75 |
| MIMAT0031922 | dre-miR-199-3-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004738 | rno-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004667 | mmu-miR-199b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000610 | rno-miR-352 | 3 | ......__ | 8 | 75 |
| MIMAT0000507 | cbr-miR-252 | 3 | ......__ | 8 | 75 |
| MIMAT0004563 | hsa-miR-199b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000232 | hsa-miR-199a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000230 | mmu-miR-199a-3p | 3 | ......__ | 8 | 75 |
