| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ataccgag | 8 | ||
| MIMAT0026463 | hhv6b-miR-Ro6-4-3p | 1 | ........ | 8 | 100 |
| MIMAT0033121 | ppc-miR-8301-5p | 1 | _....... | 7 | 87 |
| MIMAT0031015 | hsa-miR-8088 | 8 | _....... | 2 | 87 |
| MIMAT0030853 | stu-miR7984b-5p | 1 | ......._ | 7 | 87 |
| MIMAT0030852 | stu-miR7984a | 1 | ......._ | 7 | 87 |
| MIMAT0024374 | ppy-miR-4798 | 8 | ......._ | 2 | 87 |
| MIMAT0019974 | hsa-miR-4798-5p | 8 | ......._ | 2 | 87 |
| MIMAT0015617 | bmo-miR-3411 | 7 | ......._ | 1 | 87 |
| MIMAT0013661 | bmo-miR-2774b | 7 | _....... | 1 | 87 |
| MIMAT0005542 | mcmv-miR-M23-1-5p | 7 | _....... | 1 | 87 |
| MIMAT0026461 | hhv6b-miR-Ro6-3-3p | 1 | .g...... | 8 | 87 |
| MIMAT0014260 | aae-miR-308-5p | 8 | ......c. | 1 | 87 |
| MIMAT0037100 | ata-miR171c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0036971 | bta-miR-4523 | 2 | __...... | 7 | 75 |
| MIMAT0036525 | tch-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0036221 | chi-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0035843 | bra-miR391-3p | 7 | ......__ | 2 | 75 |
| MIMAT0035656 | bra-miR9552b-3p | 3 | __...... | 8 | 75 |
| MIMAT0035322 | gsa-miR-9390-5p | 8 | ......__ | 3 | 75 |
| MIMAT0035295 | gsa-miR-278-3p | 6 | __...... | 1 | 75 |
| MIMAT0034281 | cfa-miR-8791a | 8 | __...... | 3 | 75 |
| MIMAT0033364 | str-miR-7880m-5p | 8 | _......_ | 3 | 75 |
| MIMAT0033264 | ppc-miR-8364l-5p | 7 | __...... | 2 | 75 |
| MIMAT0033250 | ppc-miR-8282b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0033091 | ppc-miR-8289-5p | 1 | __...... | 6 | 75 |
| MIMAT0030792 | prd-miR-234-5p | 6 | ......__ | 1 | 75 |
| MIMAT0029597 | cbr-miR-7591 | 8 | _......_ | 3 | 75 |
| MIMAT0028968 | oan-miR-7411-5p | 8 | ......__ | 3 | 75 |
| MIMAT0026381 | bma-miR-5880b | 7 | _......_ | 2 | 75 |
| MIMAT0026036 | mdm-miR2118c | 2 | _......_ | 7 | 75 |
| MIMAT0026035 | mdm-miR2118b | 2 | _......_ | 7 | 75 |
| MIMAT0026034 | mdm-miR2118a | 2 | _......_ | 7 | 75 |
| MIMAT0025309 | prv-miR-LLT6 | 3 | _......_ | 8 | 75 |
| MIMAT0023957 | cgr-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0023597 | stu-miR482b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0023034 | tur-miR-276-5p | 8 | __...... | 3 | 75 |
| MIMAT0022308 | cel-miR-5593-3p | 1 | ......__ | 6 | 75 |
| MIMAT0022117 | osa-miR5484 | 2 | __...... | 7 | 75 |
| MIMAT0019061 | hsa-miR-4523 | 2 | __...... | 7 | 75 |
| MIMAT0018807 | tca-miR-252b-3p | 8 | __...... | 3 | 75 |
| MIMAT0018690 | tca-miR-3830-5p | 6 | __...... | 1 | 75 |
| MIMAT0018613 | ame-miR-3744 | 6 | ......__ | 1 | 75 |
| MIMAT0018597 | ame-miR-3715 | 6 | _......_ | 1 | 75 |
| MIMAT0015883 | ppy-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0015675 | nvi-miR-iab-4 | 6 | ......__ | 1 | 75 |
| MIMAT0017538 | aly-miR391-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015546 | bmo-miR-3360 | 8 | _......_ | 3 | 75 |
| MIMAT0015545 | bmo-miR-3359 | 8 | ......__ | 3 | 75 |
| MIMAT0014330 | gar-miR2947 | 2 | ......__ | 7 | 75 |
| MIMAT0016977 | aae-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0013881 | ssc-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0013832 | osa-miR2880 | 7 | ......__ | 2 | 75 |
| MIMAT0013040 | eca-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0013759 | bmo-miR-2774c | 6 | __...... | 1 | 75 |
| MIMAT0013658 | bmo-miR-2774a | 6 | __...... | 1 | 75 |
| MIMAT0012678 | dpu-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0013514 | mtr-miR2680e | 8 | __...... | 3 | 75 |
| MIMAT0013513 | mtr-miR2680d | 8 | __...... | 3 | 75 |
| MIMAT0013512 | mtr-miR2680c | 8 | __...... | 3 | 75 |
| MIMAT0013511 | mtr-miR2680b | 8 | __...... | 3 | 75 |
| MIMAT0013510 | mtr-miR2680a | 8 | __...... | 3 | 75 |
| MIMAT0013348 | mtr-miR2627 | 8 | _......_ | 3 | 75 |
| MIMAT0026923 | bdi-miR171c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0011318 | mtr-miR2118 | 2 | _......_ | 7 | 75 |
| MIMAT0012149 | sme-miR-2158-3p | 6 | _......_ | 1 | 75 |
| MIMAT0009163 | bmo-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0009090 | dya-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0009005 | dwi-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0008964 | dvi-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0008856 | dsi-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0008833 | dse-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0008741 | dpe-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0008681 | dmo-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0008579 | dgr-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0008524 | der-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0008441 | dan-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0008394 | tca-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0008142 | ptr-miR-423 | 8 | __...... | 3 | 75 |
| MIMAT0020361 | cel-miR-58b-5p | 8 | __...... | 3 | 75 |
| MIMAT0006322 | mml-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0007035 | oan-miR-1370 | 2 | __...... | 7 | 75 |
| MIMAT0005313 | rno-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0005211 | ppt-miR1079-5p | 2 | __...... | 7 | 75 |
| MIMAT0004273 | ath-miR851-5p | 7 | __...... | 2 | 75 |
| MIMAT0003454 | mmu-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0003452 | mmu-miR-678 | 8 | __...... | 3 | 75 |
| MIMAT0001340 | hsa-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0001206 | dps-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0031904 | ath-miR391-3p | 7 | ......__ | 2 | 75 |
| MIMAT0000413 | dme-miR-iab-4-3p | 6 | ......__ | 1 | 75 |
| MIMAT0020330 | cel-miR-234-5p | 6 | ......__ | 1 | 75 |
