| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atacggc | 7 | ||
| MIMAT0004408 | rrv-miR-rR1-2 | 1 | ....... | 7 | 100 |
| MIMAT0037304 | cre-miR9897-3p | 2 | _...... | 7 | 85 |
| MIMAT0036355 | gma-miR9735 | 1 | _...... | 6 | 85 |
| MIMAT0035889 | chi-let-7e-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032888 | ppc-miR-42c-5p | 6 | _...... | 1 | 85 |
| MIMAT0030704 | prd-miR-7928-5p | 3 | _...... | 8 | 85 |
| MIMAT0028466 | mdo-miR-7250-5p | 1 | _...... | 6 | 85 |
| MIMAT0026296 | ccr-miR-738 | 3 | _...... | 8 | 85 |
| MIMAT0025170 | mmu-miR-6416-5p | 8 | ......_ | 3 | 85 |
| MIMAT0024793 | hbr-miR6173 | 7 | _...... | 2 | 85 |
| MIMAT0023302 | osa-miR5828 | 2 | _...... | 7 | 85 |
| MIMAT0021048 | ath-miR5024-3p | 6 | ......_ | 1 | 85 |
| MIMAT0018538 | ame-miR-3720 | 1 | ......_ | 6 | 85 |
| MIMAT0009782 | nve-miR-2031-5p | 1 | _...... | 6 | 85 |
| MIMAT0026792 | mml-let-7e-3p | 3 | ......_ | 8 | 85 |
| MIMAT0005802 | mdv1-miR-M5-5p | 8 | ......_ | 3 | 85 |
| MIMAT0003769 | dre-miR-738 | 3 | _...... | 8 | 85 |
| MIMAT0019089 | rlcv-miR-rL1-11-5p | 6 | ......_ | 1 | 85 |
| MIMAT0004706 | rno-let-7e-3p | 3 | ......_ | 8 | 85 |
| MIMAT0017016 | mmu-let-7e-3p | 3 | ......_ | 8 | 85 |
| MIMAT0004485 | hsa-let-7e-3p | 3 | ......_ | 8 | 85 |
