| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atcaaca | 7 | ||
| MIMAT0036219 | chi-miR-421-3p | 1 | ....... | 7 | 100 |
| MIMAT0034981 | efu-miR-9308 | 7 | ....... | 1 | 100 |
| MIMAT0034787 | efu-miR-9201b | 7 | ....... | 1 | 100 |
| MIMAT0028663 | mdo-miR-505-3p | 1 | ....... | 7 | 100 |
| MIMAT0024168 | ggo-miR-421 | 1 | ....... | 7 | 100 |
| MIMAT0020594 | ssc-miR-545-3p | 1 | ....... | 7 | 100 |
| MIMAT0022962 | ssc-miR-421-3p | 1 | ....... | 7 | 100 |
| MIMAT0017933 | aly-miR4244 | 8 | ....... | 2 | 100 |
| MIMAT0016768 | cin-miR-4162-5p | 8 | ....... | 2 | 100 |
| MIMAT0015880 | ppy-miR-421 | 1 | ....... | 7 | 100 |
| MIMAT0012434 | dsi-miR-987-3p | 2 | ....... | 8 | 100 |
| MIMAT0012236 | dps-miR-987-3p | 2 | ....... | 8 | 100 |
| MIMAT0012084 | bta-miR-2488 | 8 | ....... | 2 | 100 |
| MIMAT0009314 | bta-miR-421 | 1 | ....... | 7 | 100 |
| MIMAT0008140 | ptr-miR-421 | 1 | ....... | 7 | 100 |
| MIMAT0006755 | cfa-miR-421 | 1 | ....... | 7 | 100 |
| MIMAT0006319 | mml-miR-421 | 1 | ....... | 7 | 100 |
| MIMAT0020885 | dme-miR-987-3p | 1 | ....... | 7 | 100 |
| MIMAT0004869 | mmu-miR-421-3p | 1 | ....... | 7 | 100 |
| MIMAT0003807 | bta-miR-545-3p | 1 | ....... | 7 | 100 |
| MIMAT0003339 | hsa-miR-421 | 1 | ....... | 7 | 100 |
| MIMAT0017175 | rno-miR-421-3p | 1 | ....... | 7 | 100 |
| MIMAT0036903 | oha-miR-338-5p | 1 | _...... | 6 | 85 |
| MIMAT0036499 | tch-miR-505-3p | 3 | _...... | 8 | 85 |
| MIMAT0036278 | chi-miR-545-3p | 1 | _...... | 6 | 85 |
| MIMAT0036269 | chi-miR-505-3p | 1 | _...... | 6 | 85 |
| MIMAT0035814 | hvu-miR397b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0035691 | bra-miR9566-5p | 7 | _...... | 2 | 85 |
| MIMAT0035401 | nve-miR-9440 | 3 | ......_ | 8 | 85 |
| MIMAT0035145 | efu-miR-9355 | 8 | _...... | 3 | 85 |
| MIMAT0035003 | efu-miR-9318a | 6 | _...... | 1 | 85 |
| MIMAT0034527 | eca-miR-8990 | 6 | _...... | 1 | 85 |
| MIMAT0034191 | gra-miR8761 | 6 | _...... | 1 | 85 |
| MIMAT0033961 | esi-miR8624a | 8 | ......_ | 3 | 85 |
| MIMAT0033882 | atr-miR8594.1 | 3 | ......_ | 8 | 85 |
| MIMAT0033806 | pxy-miR-8543 | 3 | ......_ | 8 | 85 |
| MIMAT0033674 | sma-miR-8476-3p | 8 | ......_ | 3 | 85 |
| MIMAT0033534 | sma-miR-8415-5p | 8 | ......_ | 3 | 85 |
| MIMAT0033012 | ppc-miR-8264-5p | 8 | _...... | 3 | 85 |
| MIMAT0032974 | ppc-miR-8253-5p | 6 | _...... | 1 | 85 |
| MIMAT0031331 | stu-miR398a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0031272 | stu-miR827-5p | 8 | _...... | 3 | 85 |
| MIMAT0030506 | prd-miR-7877-5p | 8 | ......_ | 3 | 85 |
| MIMAT0030270 | bdi-miR7762-5p | 8 | ......_ | 3 | 85 |
| MIMAT0029660 | cbn-miR-7621a | 1 | _...... | 6 | 85 |
| MIMAT0029620 | crm-miR-7603 | 6 | _...... | 1 | 85 |
| MIMAT0028361 | mml-miR-7198-3p | 1 | _...... | 6 | 85 |
| MIMAT0028228 | hsa-miR-7159-5p | 2 | _...... | 7 | 85 |
| MIMAT0026448 | sbi-miR6233-5p | 6 | _...... | 1 | 85 |
| MIMAT0027312 | ppe-miR6282 | 6 | ......_ | 1 | 85 |
| MIMAT0024228 | ggo-miR-505 | 2 | _...... | 7 | 85 |
| MIMAT0023980 | cgr-miR-505-3p | 2 | _...... | 7 | 85 |
| MIMAT0022348 | cin-miR-5610-3p | 8 | _...... | 3 | 85 |
| MIMAT0022084 | aca-miR-5457 | 1 | _...... | 6 | 85 |
| MIMAT0021208 | mtr-miR2670e | 3 | _...... | 8 | 85 |
| MIMAT0018329 | gma-miR4410 | 8 | _...... | 3 | 85 |
| MIMAT0018229 | gma-miR4341 | 8 | _...... | 3 | 85 |
| MIMAT0018829 | tca-miR-3868-3p | 1 | ......_ | 6 | 85 |
| MIMAT0018034 | vvi-miR3631d | 8 | _...... | 3 | 85 |
| MIMAT0018033 | vvi-miR3631c | 8 | _...... | 3 | 85 |
| MIMAT0018031 | vvi-miR3631b-5p | 8 | _...... | 3 | 85 |
| MIMAT0018029 | vvi-miR3631a-5p | 8 | _...... | 3 | 85 |
| MIMAT0016636 | cin-miR-4074-5p | 6 | _...... | 1 | 85 |
| MIMAT0017839 | rno-miR-3065-5p | 1 | _...... | 6 | 85 |
| MIMAT0016191 | ppy-miR-1267 | 8 | _...... | 3 | 85 |
| MIMAT0016086 | ppy-miR-653 | 7 | _...... | 2 | 85 |
| MIMAT0015928 | ppy-miR-505 | 3 | _...... | 8 | 85 |
| MIMAT0017607 | aly-miR827-5p | 8 | _...... | 3 | 85 |
| MIMAT0017567 | aly-miR398b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0015066 | hsa-miR-3065-5p | 1 | _...... | 6 | 85 |
| MIMAT0014836 | mmu-miR-3065-5p | 1 | _...... | 6 | 85 |
| MIMAT0013961 | ssc-miR-505 | 1 | _...... | 6 | 85 |
| MIMAT0013239 | eca-miR-545 | 1 | _...... | 6 | 85 |
| MIMAT0013229 | eca-miR-505 | 3 | _...... | 8 | 85 |
| MIMAT0012947 | eca-miR-653 | 7 | _...... | 2 | 85 |
| MIMAT0012632 | bmo-miR-2752 | 2 | _...... | 7 | 85 |
| MIMAT0009924 | cfa-miR-653 | 7 | _...... | 2 | 85 |
| MIMAT0009762 | nve-miR-2024b-3p | 2 | _...... | 7 | 85 |
| MIMAT0009358 | bta-miR-653 | 7 | _...... | 2 | 85 |
| MIMAT0009341 | bta-miR-505 | 3 | _...... | 8 | 85 |
| MIMAT0009102 | dya-miR-287 | 8 | _...... | 3 | 85 |
| MIMAT0009003 | dwi-miR-287 | 8 | _...... | 3 | 85 |
| MIMAT0008930 | dvi-miR-287 | 8 | _...... | 3 | 85 |
| MIMAT0008899 | dsi-miR-287 | 8 | _...... | 3 | 85 |
| MIMAT0008770 | dse-miR-287 | 8 | _...... | 3 | 85 |
| MIMAT0008757 | dpe-miR-287 | 8 | _...... | 3 | 85 |
| MIMAT0008659 | dmo-miR-287 | 8 | _...... | 3 | 85 |
| MIMAT0008563 | dgr-miR-287 | 8 | _...... | 3 | 85 |
| MIMAT0008483 | der-miR-287 | 8 | _...... | 3 | 85 |
| MIMAT0008424 | dan-miR-287 | 8 | _...... | 3 | 85 |
| MIMAT0008303 | ptr-miR-653 | 7 | _...... | 2 | 85 |
| MIMAT0008178 | ptr-miR-505 | 3 | _...... | 8 | 85 |
| MIMAT0007991 | ptr-miR-1267 | 8 | _...... | 3 | 85 |
| MIMAT0007826 | osa-miR1873 | 1 | _...... | 6 | 85 |
| MIMAT0006494 | mml-miR-653-5p | 7 | _...... | 2 | 85 |
| MIMAT0006369 | mml-miR-505-3p | 3 | _...... | 8 | 85 |
| MIMAT0007627 | gga-miR-1728-5p | 8 | ......_ | 3 | 85 |
| MIMAT0007198 | oan-miR-1396 | 8 | _...... | 3 | 85 |
| MIMAT0005921 | hsa-miR-1267 | 8 | _...... | 3 | 85 |
| MIMAT0004943 | mmu-miR-653-5p | 7 | _...... | 2 | 85 |
| MIMAT0003513 | mmu-miR-505-3p | 3 | _...... | 8 | 85 |
| MIMAT0003380 | rno-miR-505-3p | 2 | _...... | 7 | 85 |
| MIMAT0003328 | hsa-miR-653-5p | 7 | _...... | 2 | 85 |
| MIMAT0002876 | hsa-miR-505-3p | 3 | _...... | 8 | 85 |
| MIMAT0001251 | dps-miR-287 | 8 | _...... | 3 | 85 |
| MIMAT0000360 | dme-miR-287-3p | 8 | _...... | 3 | 85 |
