| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | atcaccac | 8 | ||
| MIMAT0036035 | chi-miR-197-3p | 2 | _....... | 8 | 87 |
| MIMAT0035355 | gsa-miR-9403-3p | 8 | _....... | 2 | 87 |
| MIMAT0035181 | efu-miR-9364 | 1 | _....... | 7 | 87 |
| MIMAT0035050 | efu-miR-9323 | 1 | _....... | 7 | 87 |
| MIMAT0034037 | gra-miR8666 | 8 | ......._ | 2 | 87 |
| MIMAT0029868 | mmu-miR-7677-5p | 8 | _....... | 2 | 87 |
| MIMAT0028559 | mdo-miR-7288-3p | 1 | _....... | 7 | 87 |
| MIMAT0028474 | mdo-miR-7254-5p | 1 | _....... | 7 | 87 |
| MIMAT0027701 | mmu-miR-6900-3p | 7 | ......._ | 1 | 87 |
| MIMAT0024180 | ggo-miR-197 | 2 | _....... | 8 | 87 |
| MIMAT0022371 | mmu-miR-5622-5p | 2 | _....... | 8 | 87 |
| MIMAT0020710 | bdi-miR166g-3p | 8 | _....... | 2 | 87 |
| MIMAT0016394 | cin-miR-3575-5p | 1 | ......._ | 7 | 87 |
| MIMAT0019187 | rlcv-miR-rL1-19-3p | 2 | ......._ | 8 | 87 |
| MIMAT0012959 | eca-miR-197 | 2 | _....... | 8 | 87 |
| MIMAT0009257 | bta-miR-197 | 2 | _....... | 8 | 87 |
| MIMAT0006698 | cfa-miR-197 | 2 | _....... | 8 | 87 |
| MIMAT0006230 | mml-miR-197-3p | 2 | _....... | 8 | 87 |
| MIMAT0005547 | mcmv-miR-M55-1 | 7 | ......._ | 1 | 87 |
| MIMAT0002604 | ppa-miR-197 | 2 | _....... | 8 | 87 |
| MIMAT0002603 | age-miR-197 | 2 | _....... | 8 | 87 |
| MIMAT0002602 | mne-miR-197 | 2 | _....... | 8 | 87 |
| MIMAT0002601 | ppy-miR-197 | 2 | _....... | 8 | 87 |
| MIMAT0002600 | ptr-miR-197 | 2 | _....... | 8 | 87 |
| MIMAT0020917 | osa-miR169i-5p.2 | 7 | ......._ | 1 | 87 |
| MIMAT0000227 | hsa-miR-197-3p | 2 | _....... | 8 | 87 |
| MIMAT0013174 | eca-miR-770-5p | 1 | .g...... | 8 | 87 |
| MIMAT0026902 | mml-miR-598-5p | 8 | ......g. | 1 | 87 |
| MIMAT0005338 | rno-miR-770-5p | 1 | .g...... | 8 | 87 |
| MIMAT0005324 | rno-miR-598-5p | 8 | ......g. | 1 | 87 |
| MIMAT0017283 | mmu-miR-598-5p | 8 | ......g. | 1 | 87 |
| MIMAT0004822 | mmu-miR-770-5p | 1 | .g...... | 8 | 87 |
| MIMAT0026620 | hsa-miR-598-5p | 8 | ......g. | 1 | 87 |
| MIMAT0036774 | oha-miR-1905 | 1 | __...... | 6 | 75 |
| MIMAT0036685 | oha-miR-1306-5p | 1 | __...... | 6 | 75 |
| MIMAT0034788 | efu-miR-9202 | 6 | _......_ | 1 | 75 |
| MIMAT0034085 | gra-miR8675c | 7 | ......__ | 2 | 75 |
| MIMAT0034084 | gra-miR8675b | 7 | ......__ | 2 | 75 |
| MIMAT0034046 | gra-miR8675a | 8 | ......__ | 3 | 75 |
| MIMAT0033868 | atr-miR8583 | 2 | __...... | 7 | 75 |
| MIMAT0031734 | bbe-miR-4856a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031694 | bbe-miR-4868c-3p | 7 | _......_ | 2 | 75 |
| MIMAT0031624 | bbe-miR-2062-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031614 | bbe-miR-2057-3p | 8 | __...... | 3 | 75 |
| MIMAT0031404 | mmu-miR-497b | 1 | __...... | 6 | 75 |
| MIMAT0030766 | prd-miR-7948d-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030630 | prd-miR-7579-5p | 2 | ......__ | 7 | 75 |
| MIMAT0030430 | hsa-miR-7855-5p | 7 | _......_ | 2 | 75 |
| MIMAT0029373 | lja-miR7546 | 7 | _......_ | 2 | 75 |
| MIMAT0029145 | ghr-miR7498 | 7 | _......_ | 2 | 75 |
| MIMAT0029089 | gga-miR-7467-3p | 1 | __...... | 6 | 75 |
| MIMAT0029004 | oan-miR-7427-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028814 | mdo-miR-7379-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028671 | mdo-miR-2970-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028006 | mmu-miR-7051-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027992 | mmu-miR-7044-5p | 8 | __...... | 3 | 75 |
| MIMAT0027753 | mmu-miR-6926-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025848 | hsa-miR-6511b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025822 | gga-miR-6712-5p | 7 | __...... | 2 | 75 |
| MIMAT0025791 | gga-miR-6685-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025770 | gga-miR-6669-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025479 | hsa-miR-6511a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0024814 | hvu-miR6189 | 7 | ......__ | 2 | 75 |
| MIMAT0024559 | cca-miR6108f | 8 | _......_ | 3 | 75 |
| MIMAT0023665 | ame-miR-6043 | 7 | _......_ | 2 | 75 |
| MIMAT0023313 | osa-miR5837.2 | 6 | ......__ | 1 | 75 |
| MIMAT0022467 | gma-miR5679 | 7 | _......_ | 2 | 75 |
| MIMAT0022311 | cel-miR-356b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0022165 | osa-miR5530 | 7 | __...... | 2 | 75 |
| MIMAT0020651 | rgl-miR5140 | 8 | _......_ | 3 | 75 |
| MIMAT0020161 | dme-miR-4949-3p | 7 | __...... | 2 | 75 |
| MIMAT0020106 | bfl-miR-4868c-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019593 | pma-miR-4561 | 8 | _......_ | 3 | 75 |
| MIMAT0018899 | tca-miR-3897-3p | 7 | __...... | 2 | 75 |
| MIMAT0018521 | ame-miR-3751 | 8 | __...... | 3 | 75 |
| MIMAT0016851 | hsa-miR-4299 | 8 | _......_ | 3 | 75 |
| MIMAT0016976 | cin-miR-4014-2-5p | 2 | __...... | 7 | 75 |
| MIMAT0016348 | ahy-miR3521 | 6 | _......_ | 1 | 75 |
| MIMAT0016346 | ahy-miR3520-5p | 7 | ......__ | 2 | 75 |
| MIMAT0016283 | sja-miR-3481-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016162 | ppy-miR-1226 | 1 | _......_ | 6 | 75 |
| MIMAT0014934 | mmu-miR-3102-5p.2-5p | 7 | __...... | 2 | 75 |
| MIMAT0026966 | tgu-miR-2970-3p | 3 | ......__ | 8 | 75 |
| MIMAT0014434 | cqu-miR-2941-1-5p | 7 | __...... | 2 | 75 |
| MIMAT0013122 | eca-miR-876-3p | 8 | __...... | 3 | 75 |
| MIMAT0012985 | eca-miR-1905c | 1 | __...... | 6 | 75 |
| MIMAT0012897 | eca-miR-1905a | 1 | __...... | 6 | 75 |
| MIMAT0019169 | bfl-miR-2062-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019136 | mmu-miR-1306-5p | 1 | __...... | 6 | 75 |
| MIMAT0007775 | osa-miR1854-5p | 6 | _......_ | 1 | 75 |
| MIMAT0007665 | gga-miR-1758 | 1 | _......_ | 6 | 75 |
| MIMAT0007617 | gga-miR-1720-5p | 3 | ......__ | 8 | 75 |
| MIMAT0007535 | gga-miR-1656 | 1 | _......_ | 6 | 75 |
| MIMAT0007446 | gga-miR-1354 | 8 | _......_ | 3 | 75 |
| MIMAT0007410 | gga-miR-1553-3p | 7 | __...... | 2 | 75 |
| MIMAT0015263 | cin-miR-200-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005964 | osa-miR1430 | 6 | _......_ | 1 | 75 |
| MIMAT0005861 | mml-miR-1240 | 1 | _......_ | 6 | 75 |
| MIMAT0005579 | mml-miR-1226 | 1 | _......_ | 6 | 75 |
| MIMAT0005578 | ptr-miR-1226 | 1 | _......_ | 6 | 75 |
| MIMAT0005577 | hsa-miR-1226-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005274 | smo-miR1115-3p | 1 | _......_ | 6 | 75 |
| MIMAT0005191 | ppt-miR1064-3p | 7 | ......__ | 2 | 75 |
| MIMAT0005160 | ppt-miR1046-3p | 6 | _......_ | 1 | 75 |
| MIMAT0020873 | dme-miR-976-5p | 8 | _......_ | 3 | 75 |
| MIMAT0003433 | rlcv-miR-rL1-5-3p | 3 | __...... | 8 | 75 |
| MIMAT0003431 | rlcv-miR-rL1-4-3p | 1 | __...... | 6 | 75 |
| MIMAT0003411 | ebv-miR-BART3-3p | 3 | __...... | 8 | 75 |
| MIMAT0001575 | hcmv-miR-UL22A-3p | 1 | _......_ | 6 | 75 |
