| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | attgacg | 7 | ||
| MIMAT0022991 | gma-miR397b-3p | 2 | ....... | 8 | 100 |
| MIMAT0019103 | tca-miR-13a-5p | 8 | ....... | 2 | 100 |
| MIMAT0015199 | zma-miR171j-5p | 2 | ....... | 8 | 100 |
| MIMAT0036499 | tch-miR-505-3p | 6 | _...... | 1 | 85 |
| MIMAT0036097 | chi-miR-2483-5p | 6 | _...... | 1 | 85 |
| MIMAT0035705 | mse-miR-929b | 3 | ......_ | 8 | 85 |
| MIMAT0035665 | bra-miR9556-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035572 | dvi-miR-929-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035397 | nve-miR-9436 | 1 | _...... | 6 | 85 |
| MIMAT0034191 | gra-miR8761 | 3 | _...... | 8 | 85 |
| MIMAT0032904 | ppc-miR-59-5p | 7 | _...... | 2 | 85 |
| MIMAT0032872 | ppc-miR-2a-5p | 6 | _...... | 1 | 85 |
| MIMAT0032517 | ssa-miR-216a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0025250 | ptc-miR6447 | 1 | _...... | 6 | 85 |
| MIMAT0025150 | mmu-miR-6398 | 6 | ......_ | 1 | 85 |
| MIMAT0025029 | sma-miR-2a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0024992 | hme-miR-929 | 3 | ......_ | 8 | 85 |
| MIMAT0024850 | rno-miR-509-3p | 3 | ......_ | 8 | 85 |
| MIMAT0024348 | mml-miR-514b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0023074 | tur-miR-5734-5p | 3 | ......_ | 8 | 85 |
| MIMAT0023042 | tur-miR-2-5p | 7 | _...... | 2 | 85 |
| MIMAT0021425 | asu-miR-2a-5p | 6 | _...... | 1 | 85 |
| MIMAT0020231 | egr-miR-2c-5p | 7 | _...... | 2 | 85 |
| MIMAT0018417 | nlo-miR-929 | 1 | ......_ | 6 | 85 |
| MIMAT0018414 | ngi-miR-929 | 1 | ......_ | 6 | 85 |
| MIMAT0032113 | ath-miR3932b-5p | 2 | _...... | 7 | 85 |
| MIMAT0018332 | gma-miR1520q | 1 | ......_ | 6 | 85 |
| MIMAT0018051 | vvi-miR3639-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016636 | cin-miR-4074-5p | 3 | _...... | 8 | 85 |
| MIMAT0016565 | cin-miR-4038-5p | 8 | ......_ | 3 | 85 |
| MIMAT0016460 | cin-miR-4001h-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016245 | sja-miR-2a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0015942 | ppy-miR-514 | 1 | ......_ | 6 | 85 |
| MIMAT0015928 | ppy-miR-505 | 6 | _...... | 1 | 85 |
| MIMAT0015672 | nvi-miR-929 | 1 | ......_ | 6 | 85 |
| MIMAT0015648 | aae-miR-929 | 1 | ......_ | 6 | 85 |
| MIMAT0015088 | hsa-miR-514b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0014741 | api-miR-929 | 3 | ......_ | 8 | 85 |
| MIMAT0014728 | api-miR-2c | 7 | _...... | 2 | 85 |
| MIMAT0014472 | tgu-miR-1803-3p | 1 | ......_ | 6 | 85 |
| MIMAT0014319 | aae-miR-309b-5p | 6 | _...... | 1 | 85 |
| MIMAT0013234 | eca-miR-514 | 1 | ......_ | 6 | 85 |
| MIMAT0013229 | eca-miR-505 | 6 | _...... | 1 | 85 |
| MIMAT0012459 | dsi-miR-929-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012267 | dps-miR-929-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012075 | bta-miR-2483-5p | 6 | _...... | 1 | 85 |
| MIMAT0011573 | crm-miR-2-5p | 7 | _...... | 2 | 85 |
| MIMAT0012133 | sme-miR-87c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0010023 | ppt-miR2083-3p | 3 | ......_ | 8 | 85 |
| MIMAT0009877 | cfa-miR-514 | 3 | ......_ | 8 | 85 |
| MIMAT0009158 | bmo-miR-929-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009341 | bta-miR-505 | 6 | _...... | 1 | 85 |
| MIMAT0032076 | dvi-miR-13b-2-5p | 7 | _...... | 2 | 85 |
| MIMAT0019104 | tca-miR-13b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0008178 | ptr-miR-505 | 6 | _...... | 1 | 85 |
| MIMAT0006369 | mml-miR-505-3p | 6 | _...... | 1 | 85 |
| MIMAT0007720 | gga-miR-1803 | 1 | ......_ | 6 | 85 |
| MIMAT0005787 | pbi-miR-514 | 1 | ......_ | 6 | 85 |
| MIMAT0005778 | ptr-miR-514 | 1 | ......_ | 6 | 85 |
| MIMAT0005769 | mml-miR-514a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0005761 | ssy-miR-514 | 1 | ......_ | 6 | 85 |
| MIMAT0005751 | age-miR-514 | 1 | ......_ | 6 | 85 |
| MIMAT0005744 | age-miR-509b | 3 | ......_ | 8 | 85 |
| MIMAT0005743 | age-miR-509a | 3 | ......_ | 8 | 85 |
| MIMAT0020892 | dme-miR-929-5p | 3 | ......_ | 8 | 85 |
| MIMAT0004441 | ame-miR-929 | 1 | ......_ | 6 | 85 |
| MIMAT0004891 | mmu-miR-509-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003513 | mmu-miR-505-3p | 6 | _...... | 1 | 85 |
| MIMAT0002883 | hsa-miR-514a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0002876 | hsa-miR-505-3p | 6 | _...... | 1 | 85 |
| MIMAT0020797 | dme-miR-13b-2-5p | 7 | _...... | 2 | 85 |
