| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | caaaagg | 7 | ||
| MIMAT0028183 | dev-miR-D11-3p | 2 | ....... | 8 | 100 |
| MIMAT0027313 | ppe-miR6283 | 1 | ....... | 7 | 100 |
| MIMAT0020865 | dme-miR-968-3p | 8 | ....... | 2 | 100 |
| MIMAT0012088 | sme-let-7c-3p | 8 | ....... | 2 | 100 |
| MIMAT0036820 | oha-miR-208-5p | 8 | ......_ | 3 | 85 |
| MIMAT0035587 | dvi-miR-968-3p | 7 | _...... | 2 | 85 |
| MIMAT0035281 | gsa-miR-2001-3p | 6 | _...... | 1 | 85 |
| MIMAT0033860 | atr-miR8577 | 1 | _...... | 6 | 85 |
| MIMAT0033590 | sma-miR-8442-5p | 3 | ......_ | 8 | 85 |
| MIMAT0033474 | str-miR-2-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032329 | ssa-miR-130d-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0031582 | bbe-miR-129a-5p | 6 | _...... | 1 | 85 |
| MIMAT0031427 | mmu-miR-3473g | 1 | ......_ | 6 | 85 |
| MIMAT0030808 | prd-miR-7959a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030804 | prd-miR-7959b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0029945 | bta-miR-2285w | 3 | ......_ | 8 | 85 |
| MIMAT0029404 | ipu-miR-130c | 8 | _...... | 3 | 85 |
| MIMAT0028755 | mdo-miR-1544d-3p | 6 | _...... | 1 | 85 |
| MIMAT0028745 | mdo-miR-1544b-3p | 6 | _...... | 1 | 85 |
| MIMAT0028692 | mdo-miR-7341-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031110 | mdo-miR-130c-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0028514 | mdo-miR-130c-1-5p | 8 | _...... | 3 | 85 |
| MIMAT0028482 | mdo-miR-7258-5p | 1 | _...... | 6 | 85 |
| MIMAT0027792 | mmu-miR-6946-5p | 1 | _...... | 6 | 85 |
| MIMAT0027565 | hsa-miR-6832-3p | 8 | _...... | 3 | 85 |
| MIMAT0025456 | hsa-miR-548az-5p | 1 | ......_ | 6 | 85 |
| MIMAT0024501 | mse-miR-6093 | 7 | _...... | 2 | 85 |
| MIMAT0024383 | ppy-miR-4484 | 2 | _...... | 7 | 85 |
| MIMAT0024307 | ggo-miR-4484 | 3 | _...... | 8 | 85 |
| MIMAT0024294 | ggo-miR-548f | 1 | ......_ | 6 | 85 |
| MIMAT0021227 | mtr-miR5237 | 3 | ......_ | 8 | 85 |
| MIMAT0020579 | osa-miR5080 | 1 | _...... | 6 | 85 |
| MIMAT0021066 | gma-miR5039 | 7 | _...... | 2 | 85 |
| MIMAT0019454 | pma-miR-130a-5p | 8 | _...... | 3 | 85 |
| MIMAT0019375 | pma-miR-9b | 6 | ......_ | 1 | 85 |
| MIMAT0019079 | hsa-miR-548an | 1 | _...... | 6 | 85 |
| MIMAT0019018 | hsa-miR-4484 | 1 | _...... | 6 | 85 |
| MIMAT0022739 | hsa-miR-548aj-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018609 | ame-miR-3740 | 3 | _...... | 8 | 85 |
| MIMAT0016598 | cin-miR-4054-3p | 8 | ......_ | 3 | 85 |
| MIMAT0026471 | cin-miR-4000a-2-3p | 7 | _...... | 2 | 85 |
| MIMAT0016431 | cin-miR-4000a-3p | 7 | _...... | 2 | 85 |
| MIMAT0015999 | ppy-miR-553 | 1 | _...... | 6 | 85 |
| MIMAT0015403 | bmo-miR-3223-5p | 8 | _...... | 3 | 85 |
| MIMAT0022733 | hsa-miR-548x-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015009 | hsa-miR-548t-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015008 | hsa-miR-3140-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027012 | tgu-miR-130c-5p | 8 | _...... | 3 | 85 |
| MIMAT0027006 | tgu-miR-130a-5p | 8 | _...... | 3 | 85 |
| MIMAT0014463 | tgu-miR-2963-3p | 1 | _...... | 6 | 85 |
| MIMAT0012492 | dsi-miR-992-3p | 7 | _...... | 2 | 85 |
| MIMAT0012246 | dps-miR-968-3p | 8 | _...... | 3 | 85 |
| MIMAT0012019 | bta-miR-2284h-5p | 3 | ......_ | 8 | 85 |
| MIMAT0011252 | sme-miR-2159-5p | 8 | _...... | 3 | 85 |
| MIMAT0010008 | bfl-miR-129a-5p | 6 | _...... | 1 | 85 |
| MIMAT0008227 | ptr-miR-548n | 1 | ......_ | 6 | 85 |
| MIMAT0006433 | mml-miR-570 | 1 | ......_ | 6 | 85 |
| MIMAT0006422 | mml-miR-553 | 2 | _...... | 7 | 85 |
| MIMAT0007733 | gga-miR-130c-5p | 8 | _...... | 3 | 85 |
| MIMAT0026768 | mdo-miR-1544a-3p | 6 | _...... | 1 | 85 |
| MIMAT0007375 | gma-miR1516a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0007158 | oan-miR-130b-5p | 8 | _...... | 3 | 85 |
| MIMAT0006907 | oan-miR-130c-5p | 8 | _...... | 3 | 85 |
| MIMAT0006796 | oan-miR-1327-5p | 2 | _...... | 7 | 85 |
| MIMAT0005916 | hsa-miR-548n | 1 | ......_ | 6 | 85 |
| MIMAT0022722 | hsa-miR-548g-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026739 | hsa-miR-548f-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026736 | hsa-miR-548e-5p | 1 | ......_ | 6 | 85 |
| MIMAT0005212 | ppt-miR1079-3p | 3 | ......_ | 8 | 85 |
| MIMAT0005169 | ppt-miR1052 | 8 | _...... | 3 | 85 |
| MIMAT0004279 | ath-miR855 | 3 | ......_ | 8 | 85 |
| MIMAT0002066 | ptc-miR474c | 1 | ......_ | 6 | 85 |
| MIMAT0002065 | ptc-miR474b | 1 | ......_ | 6 | 85 |
| MIMAT0002064 | ptc-miR474a | 1 | ......_ | 6 | 85 |
| MIMAT0031969 | dre-miR-130c-5p | 8 | _...... | 3 | 85 |
| MIMAT0026532 | gga-miR-130a-5p | 8 | _...... | 3 | 85 |
