| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | caccggcg | 8 | ||
| MIMAT0035795 | tae-miR397-5p | 2 | ......._ | 8 | 87 |
| MIMAT0032775 | ath-miR8176 | 8 | ......._ | 2 | 87 |
| MIMAT0021387 | rmi-miR-5316a | 2 | ......._ | 8 | 87 |
| MIMAT0016962 | rlcv-miR-rL1-35-5p | 1 | ......._ | 7 | 87 |
| MIMAT0020940 | sbi-miR397-3p | 2 | ......._ | 8 | 87 |
| MIMAT0019947 | hsa-miR-4783-3p | 8 | ......g. | 1 | 87 |
| MIMAT0019721 | hsa-miR-4655-5p | 1 | ......g. | 8 | 87 |
| MIMAT0016595 | cin-miR-4053-5p | 8 | .c...... | 1 | 87 |
| MIMAT0014707 | hsv2-miR-H24 | 1 | .t...... | 8 | 87 |
| MIMAT0037302 | ame-miR-3478 | 3 | ......__ | 8 | 75 |
| MIMAT0035710 | bhv5-miR-B13 | 2 | __...... | 7 | 75 |
| MIMAT0035259 | gsa-miR-36-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033742 | pxy-miR-8515 | 8 | _......_ | 3 | 75 |
| MIMAT0033627 | sma-miR-8457-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033515 | sma-miR-36b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033467 | str-miR-37b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033459 | str-miR-8393-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033455 | str-miR-37a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033453 | str-miR-8392-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033437 | str-miR-40-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033433 | str-miR-8386-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033282 | ppc-miR-8360-5p | 1 | __...... | 6 | 75 |
| MIMAT0033233 | ppc-miR-2235a-9-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033070 | ppc-miR-8283-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033034 | ppc-miR-2235a-11-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033005 | ppc-miR-2235a-10-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032968 | ppc-miR-8251-5p | 1 | ......__ | 6 | 75 |
| MIMAT0032962 | ppc-miR-8249-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032953 | ppc-miR-2235d-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032951 | ppc-miR-2235c-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032946 | ppc-miR-8243-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032913 | ppc-miR-8232-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032889 | ppc-miR-42c-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032883 | ppc-miR-36-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032851 | ppc-miR-2235b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032683 | ssa-miR-731-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031770 | hbv-miR-B21RC-5p | 7 | __...... | 2 | 75 |
| MIMAT0031749 | bma-miR-36a | 2 | ......__ | 7 | 75 |
| MIMAT0031379 | osa-miR531c | 8 | __...... | 3 | 75 |
| MIMAT0030839 | prd-miR-7968-3p | 1 | ......__ | 6 | 75 |
| MIMAT0030817 | prd-miR-7950b-3p | 2 | __...... | 7 | 75 |
| MIMAT0030813 | prd-miR-39-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030771 | prd-miR-7950a-3p | 2 | __...... | 7 | 75 |
| MIMAT0030715 | prd-miR-35a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030713 | prd-miR-7950c-3p | 2 | __...... | 7 | 75 |
| MIMAT0030681 | prd-miR-40-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030567 | prd-miR-37-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030557 | prd-miR-7940b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030531 | prd-miR-36-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030511 | prd-miR-35b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030483 | prd-miR-50-3p | 1 | __...... | 6 | 75 |
| MIMAT0029941 | cbn-miR-35n | 2 | ......__ | 7 | 75 |
| MIMAT0029940 | cbn-miR-35m | 2 | ......__ | 7 | 75 |
| MIMAT0029939 | cbn-miR-35l | 2 | ......__ | 7 | 75 |
| MIMAT0029938 | cbn-miR-35k | 2 | ......__ | 7 | 75 |
| MIMAT0029937 | cbn-miR-35j | 2 | ......__ | 7 | 75 |
| MIMAT0029936 | cbn-miR-35i | 2 | ......__ | 7 | 75 |
| MIMAT0029935 | cbn-miR-35h | 2 | ......__ | 7 | 75 |
| MIMAT0029934 | cbn-miR-35g | 2 | ......__ | 7 | 75 |
| MIMAT0029933 | cbn-miR-35f | 2 | ......__ | 7 | 75 |
| MIMAT0029932 | cbn-miR-35e | 2 | ......__ | 7 | 75 |
| MIMAT0029931 | cbn-miR-35d | 2 | ......__ | 7 | 75 |
| MIMAT0029930 | cbn-miR-35c | 2 | ......__ | 7 | 75 |
| MIMAT0029929 | cbn-miR-35b | 2 | ......__ | 7 | 75 |
| MIMAT0029928 | cbn-miR-35a | 2 | ......__ | 7 | 75 |
| MIMAT0029927 | cbn-miR-36 | 2 | ......__ | 7 | 75 |
| MIMAT0029926 | cbn-miR-38 | 2 | ......__ | 7 | 75 |
| MIMAT0029925 | cbn-miR-39 | 2 | ......__ | 7 | 75 |
| MIMAT0029924 | crm-miR-35i | 2 | ......__ | 7 | 75 |
| MIMAT0029921 | crm-miR-36 | 2 | ......__ | 7 | 75 |
| MIMAT0029920 | crm-miR-35h | 2 | ......__ | 7 | 75 |
| MIMAT0029919 | cbr-miR-35g | 2 | ......__ | 7 | 75 |
| MIMAT0029918 | cbr-miR-35f | 2 | ......__ | 7 | 75 |
| MIMAT0029861 | mmu-miR-7676-3p | 7 | ......__ | 2 | 75 |
| MIMAT0029339 | lja-miR7523b | 3 | ......__ | 8 | 75 |
| MIMAT0029338 | lja-miR7523a | 3 | ......__ | 8 | 75 |
| MIMAT0028166 | hcmv-miR-US22-3p | 7 | __...... | 2 | 75 |
| MIMAT0027813 | mmu-miR-6956-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025296 | mja-miR-6489-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025041 | sma-miR-36a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0023804 | cgr-miR-181d-3p | 3 | ......__ | 8 | 75 |
| MIMAT0023444 | hco-miR-40a | 2 | ......__ | 7 | 75 |
| MIMAT0023430 | hco-miR-40d | 2 | ......__ | 7 | 75 |
| MIMAT0023429 | hco-miR-40c | 2 | ......__ | 7 | 75 |
| MIMAT0023323 | hco-miR-40b | 2 | ......__ | 7 | 75 |
| MIMAT0023050 | tur-miR-5730-5p | 2 | ......__ | 7 | 75 |
| MIMAT0022181 | cel-miR-5545-5p | 6 | _......_ | 1 | 75 |
| MIMAT0021549 | asu-miR-5348-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021547 | asu-miR-36f-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021448 | asu-miR-36e-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021446 | asu-miR-36d-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021444 | asu-miR-36c-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021442 | asu-miR-36b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021440 | asu-miR-36a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021388 | rmi-miR-5316b | 2 | ......__ | 7 | 75 |
| MIMAT0020548 | hvu-miR5052 | 1 | _......_ | 6 | 75 |
| MIMAT0021068 | gma-miR169i-3p | 6 | ......__ | 1 | 75 |
| MIMAT0020141 | cel-miR-4935 | 2 | __...... | 7 | 75 |
| MIMAT0018883 | tca-miR-3791-3p | 2 | ......__ | 7 | 75 |
| MIMAT0018879 | tca-miR-3890-3p | 7 | _......_ | 2 | 75 |
| MIMAT0018851 | tca-miR-3879-3p | 2 | _......_ | 7 | 75 |
| MIMAT0018570 | ame-miR-3791 | 2 | ......__ | 7 | 75 |
| MIMAT0016258 | sja-miR-36-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017562 | aly-miR397a-3p | 1 | __...... | 6 | 75 |
| MIMAT0015386 | bmo-miR-2808d | 1 | __...... | 6 | 75 |
| MIMAT0015079 | hsa-miR-3195 | 8 | __...... | 3 | 75 |
| MIMAT0014778 | api-miR-3040 | 8 | _......_ | 3 | 75 |
| MIMAT0014103 | bma-miR-36b | 2 | ......__ | 7 | 75 |
| MIMAT0014102 | bma-miR-36c | 2 | ......__ | 7 | 75 |
| MIMAT0013963 | bhv1-miR-B2 | 2 | __...... | 7 | 75 |
| MIMAT0012627 | bmo-miR-2748 | 2 | __...... | 7 | 75 |
| MIMAT0013530 | cte-miR-36 | 2 | ......__ | 7 | 75 |
| MIMAT0011720 | ppc-miR-2251a | 2 | ......__ | 7 | 75 |
| MIMAT0011714 | ppc-miR-38 | 2 | ......__ | 7 | 75 |
| MIMAT0011690 | ppc-miR-2240a | 2 | ......__ | 7 | 75 |
| MIMAT0011681 | ppc-miR-2235a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0011654 | ppc-miR-42b | 2 | ......__ | 7 | 75 |
| MIMAT0011647 | ppc-miR-37 | 2 | ......__ | 7 | 75 |
| MIMAT0011641 | ppc-miR-42a | 2 | ......__ | 7 | 75 |
| MIMAT0011605 | crm-miR-35g | 2 | ......__ | 7 | 75 |
| MIMAT0011603 | crm-miR-38 | 2 | ......__ | 7 | 75 |
| MIMAT0011532 | crm-miR-42 | 2 | ......__ | 7 | 75 |
| MIMAT0011514 | crm-miR-35f | 2 | ......__ | 7 | 75 |
| MIMAT0011513 | crm-miR-35e | 2 | ......__ | 7 | 75 |
| MIMAT0011739 | crm-miR-35d | 2 | ......__ | 7 | 75 |
| MIMAT0011512 | crm-miR-35c-3p | 2 | ......__ | 7 | 75 |
| MIMAT0011511 | crm-miR-35b | 2 | ......__ | 7 | 75 |
| MIMAT0011510 | crm-miR-35a | 2 | ......__ | 7 | 75 |
| MIMAT0011506 | crm-miR-39 | 2 | ......__ | 7 | 75 |
| MIMAT0011505 | crm-miR-40 | 2 | ......__ | 7 | 75 |
| MIMAT0011504 | crm-miR-41 | 2 | ......__ | 7 | 75 |
| MIMAT0011489 | cbr-miR-41b | 2 | ......__ | 7 | 75 |
| MIMAT0011483 | cbr-miR-35b | 2 | ......__ | 7 | 75 |
| MIMAT0011470 | cbr-miR-35d-3p | 2 | ......__ | 7 | 75 |
| MIMAT0011468 | cbr-miR-35e | 2 | ......__ | 7 | 75 |
| MIMAT0011467 | cbr-miR-35c | 2 | ......__ | 7 | 75 |
| MIMAT0011261 | sme-miR-36c-3p | 2 | ......__ | 7 | 75 |
| MIMAT0011242 | sme-miR-36b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0011213 | mmu-miR-2137 | 2 | __...... | 7 | 75 |
| MIMAT0009136 | osa-miR1319a | 2 | _......_ | 7 | 75 |
| MIMAT0007763 | osa-miR531b | 8 | __...... | 3 | 75 |
| MIMAT0007580 | gga-miR-1689-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007488 | gga-miR-1621-5p | 1 | _......_ | 6 | 75 |
| MIMAT0026773 | mdo-miR-1549-5p | 7 | __...... | 2 | 75 |
| MIMAT0005988 | osa-miR1437a | 2 | __...... | 7 | 75 |
| MIMAT0017296 | rno-miR-181d-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017264 | mmu-miR-181d-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003982 | sme-miR-36a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004832 | ppt-miR1220b | 8 | ......__ | 3 | 75 |
| MIMAT0004831 | ppt-miR1220a | 8 | ......__ | 3 | 75 |
| MIMAT0004818 | ebv-miR-BART13-5p | 2 | _......_ | 7 | 75 |
| MIMAT0002887 | osa-miR531a | 8 | __...... | 3 | 75 |
| MIMAT0026608 | hsa-miR-181d-3p | 2 | ......__ | 7 | 75 |
| MIMAT0031980 | dre-miR-181c-3p | 8 | __...... | 3 | 75 |
| MIMAT0001318 | cbr-miR-41a | 2 | ......__ | 7 | 75 |
| MIMAT0001317 | cbr-miR-40 | 2 | ......__ | 7 | 75 |
| MIMAT0001316 | cbr-miR-39 | 2 | ......__ | 7 | 75 |
| MIMAT0001315 | cbr-miR-38 | 2 | ......__ | 7 | 75 |
| MIMAT0001314 | cbr-miR-36 | 2 | ......__ | 7 | 75 |
| MIMAT0001313 | cbr-miR-35a | 2 | ......__ | 7 | 75 |
| MIMAT0000467 | cbr-miR-42 | 1 | ......__ | 6 | 75 |
| MIMAT0000327 | cel-miR-271 | 7 | __...... | 2 | 75 |
| MIMAT0000013 | cel-miR-42-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000012 | cel-miR-41-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000011 | cel-miR-40-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000010 | cel-miR-39-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000009 | cel-miR-38-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000008 | cel-miR-37-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000007 | cel-miR-36-3p | 2 | ......__ | 7 | 75 |
| MIMAT0000006 | cel-miR-35-3p | 2 | ......__ | 7 | 75 |
