| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cagctagg | 8 | ||
| MIMAT0012864 | hvt-miR-H12-3p | 1 | ........ | 8 | 100 |
| MIMAT0012722 | hvt-miR-H9-3p | 1 | ........ | 8 | 100 |
| MIMAT0026411 | sbi-miR6222-3p | 7 | ......._ | 1 | 87 |
| MIMAT0026188 | mdm-miR1511 | 8 | _....... | 2 | 87 |
| MIMAT0007408 | gga-miR-1552-3p | 7 | ......._ | 1 | 87 |
| MIMAT0028569 | mdo-miR-7292-3p | 1 | .t...... | 8 | 87 |
| MIMAT0022372 | mmu-miR-5622-3p | 8 | ......a. | 1 | 87 |
| MIMAT0036231 | chi-miR-449a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035596 | dvi-miR-980-3p | 6 | ......__ | 1 | 75 |
| MIMAT0034053 | gra-miR8682 | 7 | _......_ | 2 | 75 |
| MIMAT0033801 | pxy-miR-745 | 6 | ......__ | 1 | 75 |
| MIMAT0033749 | pxy-miR-2756 | 8 | ......__ | 3 | 75 |
| MIMAT0033522 | sma-miR-8409-5p | 2 | _......_ | 7 | 75 |
| MIMAT0033239 | ppc-miR-8346-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033164 | ppc-miR-8314-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032673 | ssa-miR-725-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032538 | ssa-miR-221-3p | 7 | __...... | 2 | 75 |
| MIMAT0032393 | ssa-miR-155-3p | 8 | __...... | 3 | 75 |
| MIMAT0031536 | ppe-miR7125-5p | 1 | __...... | 6 | 75 |
| MIMAT0030403 | ptc-miR7827 | 1 | __...... | 6 | 75 |
| MIMAT0029906 | mmu-miR-7688-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028990 | oan-miR-7420-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028803 | mdo-miR-7373b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028685 | mdo-miR-7338-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028520 | mdo-miR-7273-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028077 | mmu-miR-7085-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028051 | mmu-miR-7072-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027774 | mmu-miR-6937-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025187 | ptc-miR6461 | 2 | _......_ | 7 | 75 |
| MIMAT0027303 | ppe-miR319b | 6 | ......__ | 1 | 75 |
| MIMAT0027298 | ppe-miR6272 | 6 | ......__ | 1 | 75 |
| MIMAT0023694 | hsa-miR-6069 | 3 | __...... | 8 | 75 |
| MIMAT0023187 | gma-miR5782 | 6 | ......__ | 1 | 75 |
| MIMAT0022482 | hsa-miR-5690 | 2 | ......__ | 7 | 75 |
| MIMAT0022318 | cin-miR-5597-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027076 | bdi-miR5163a-5p | 6 | __...... | 1 | 75 |
| MIMAT0020194 | dme-miR-4968-5p | 6 | ......__ | 1 | 75 |
| MIMAT0020493 | bfl-miR-4900b | 6 | ......__ | 1 | 75 |
| MIMAT0020492 | bfl-miR-4900a | 6 | ......__ | 1 | 75 |
| MIMAT0019729 | hsa-miR-4661-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018687 | tca-miR-3828-3p | 3 | _......_ | 8 | 75 |
| MIMAT0015599 | bmo-miR-3395 | 1 | _......_ | 6 | 75 |
| MIMAT0015447 | bmo-miR-3263 | 6 | ......__ | 1 | 75 |
| MIMAT0015426 | bmo-miR-3244 | 6 | ......__ | 1 | 75 |
| MIMAT0014428 | cqu-miR-980 | 6 | ......__ | 1 | 75 |
| MIMAT0014236 | aae-miR-980-3p | 6 | ......__ | 1 | 75 |
| MIMAT0012487 | dsi-miR-970-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012482 | dsi-miR-980-3p | 6 | ......__ | 1 | 75 |
| MIMAT0012224 | dps-miR-980-3p | 6 | ......__ | 1 | 75 |
| MIMAT0012221 | dps-miR-970-5p | 1 | _......_ | 6 | 75 |
| MIMAT0011561 | crm-miR-60-5p | 1 | _......_ | 6 | 75 |
| MIMAT0010020 | ppt-miR2081 | 1 | _......_ | 6 | 75 |
| MIMAT0026876 | mml-miR-449a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0007631 | gga-miR-1730-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017332 | mmu-miR-1198-3p | 2 | _......_ | 7 | 75 |
| MIMAT0005267 | smo-miR1110 | 1 | __...... | 6 | 75 |
| MIMAT0005496 | dme-miR-980-3p | 6 | ......__ | 1 | 75 |
| MIMAT0020867 | dme-miR-970-5p | 1 | _......_ | 6 | 75 |
| MIMAT0004383 | ppt-miR898a-3p | 1 | __...... | 6 | 75 |
| MIMAT0026685 | mdo-miR-449a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0011413 | sme-miR-31b-1-3p | 1 | ......__ | 6 | 75 |
| MIMAT0004205 | bmo-miR-282-5p | 7 | __...... | 2 | 75 |
| MIMAT0032010 | dre-miR-725-5p | 2 | __...... | 7 | 75 |
| MIMAT0017181 | rno-miR-449a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0017180 | mmu-miR-449a-3p | 1 | ......__ | 6 | 75 |
