Result for your query miRNA sequence
>rhcmv-miR-rh96-1
cagugcu

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1cagtgct7
MIMAT0034603eca-miR-35488.......2100
MIMAT0034153gra-miR87418.......2100
MIMAT0025703gga-miR-6608-3p7.......1100
MIMAT0025100mmu-miR-63578.......2100
MIMAT0025088mmu-miR-63458.......2100
MIMAT0027269pgi-miR6143b-3p8.......2100
MIMAT0018792tca-miR-3860-5p8.......2100
MIMAT0017806rno-miR-35488.......2100
MIMAT0009615sko-miR-33-3p1.......7100
MIMAT0009433mmu-miR-19602.......8100
MIMAT0007777osa-miR18557.......1100
MIMAT0007640gga-miR-17378.......2100
MIMAT0007253oan-miR-1419d-5p2.......8100
MIMAT0037097ata-miR393-3p1......_685
MIMAT0036885oha-miR-301a-3p1......_685
MIMAT0036883oha-miR-301b-3p1......_685
MIMAT0036805oha-miR-20b-5p3_......885
MIMAT0036693oha-miR-130d1......_685
MIMAT0036692oha-miR-130c-3p1......_685
MIMAT0036690oha-miR-130b-3p1......_685
MIMAT0036688oha-miR-130a-3p1......_685
MIMAT0036577tch-miR-130a-3p1......_685
MIMAT0036418ggo-miR-519b2_......785
MIMAT0036409ggo-miR-520f2_......785
MIMAT0036329ocu-miR-520e3_......885
MIMAT0036326ocu-miR-294-3p3_......885
MIMAT0036323ocu-miR-302d-3p3_......885
MIMAT0036321ocu-miR-302a-3p3_......885
MIMAT0036319ocu-miR-302c-3p3_......885
MIMAT0036317ocu-miR-302b-3p3_......885
MIMAT0036154chi-miR-33b-3p1......_685
MIMAT0036120chi-miR-301b1......_685
MIMAT0036119chi-miR-301a-3p1......_685
MIMAT0036092chi-miR-24048......_385
MIMAT0035946chi-miR-130b-3p1......_685
MIMAT0035944chi-miR-130a-3p1......_685
MIMAT0035909chi-miR-106b-3p8......_385
MIMAT0035134efu-miR-1523......_885
MIMAT0034992efu-miR-1301......_685
MIMAT0034713eca-miR-8908a3......_885
MIMAT0034639eca-miR-3723_......885
MIMAT0032807cel-miR-8197-5p1_......685
MIMAT0032747ssa-miR-8160-3p8_......385
MIMAT0032681ssa-miR-730a-2-3p3......_885
MIMAT0032636ssa-miR-430c-3p3_......885
MIMAT0032634ssa-miR-430b-3p3_......885
MIMAT0032632ssa-miR-430a-3p3_......885
MIMAT0032599ssa-miR-301d-3p1......_685
MIMAT0032597ssa-miR-301c-3p1......_685
MIMAT0032595ssa-miR-301b-3p1......_685
MIMAT0032593ssa-miR-301a-3p1......_685
MIMAT0032328ssa-miR-130d-3p1......_685
MIMAT0032325ssa-miR-130b-3p1......_685
MIMAT0032323ssa-miR-130a-2-3p1......_685
MIMAT0032322ssa-miR-130a-3p1......_685
MIMAT0031823cpa-miR4088......_385
MIMAT0030679prd-miR-7919-3p7_......285
MIMAT0030363hhi-miR-430b3_......885
MIMAT0030362hhi-miR-3011......_685
MIMAT0030341hhi-miR-430a3_......885
MIMAT0030301bdi-miR7775-3p3_......885
MIMAT0030268bdi-miR7761-5p1......_685
MIMAT0029495ipu-miR-301c1......_685
MIMAT0029494ipu-miR-301a1......_685
MIMAT0029083gga-miR-7464-3p8......_385
MIMAT0029049gga-miR-7447-3p8_......385
MIMAT0028590mdo-miR-7299-5p2_......785
MIMAT0028565mdo-miR-130b-3p1......_685
MIMAT0028515mdo-miR-130c-3p1......_685
MIMAT0028346mml-miR-7193-5p2_......785
MIMAT0026298ccr-miR-4303_......885
MIMAT0026288ccr-miR-301a1......_685
MIMAT0026212ccr-miR-130c1......_685
MIMAT0026211ccr-miR-130b1......_685
MIMAT0026210ccr-miR-130a1......_685
MIMAT0026153cme-miR4088......_385
MIMAT0026013mdm-miR408a8......_385
MIMAT0025755gga-miR-6654-3p8_......385
MIMAT0025711gga-miR-6615-3p8......_385
MIMAT0025137mmu-miR-63891......_685
MIMAT0025132mmu-miR-130c1......_685
MIMAT0025090mmu-miR-63471......_685
MIMAT0025084mmu-miR-63411......_685
MIMAT0025047rno-miR-63148......_385
MIMAT0024758nta-miR6145c1......_685
MIMAT0027210lus-miR408a8......_385
MIMAT0024419mes-miR4088......_385
MIMAT0024156ggo-miR-130b1......_685
MIMAT0023891cgr-miR-301a-3p1......_685
MIMAT0023757cgr-miR-130b-3p1......_685
MIMAT0023755cgr-miR-130a-3p1......_685
MIMAT0023733cgr-miR-106b-3p8......_385
MIMAT0023538dpr-miR4088......_385
MIMAT0022830sha-miR-130a1......_685
MIMAT0022765vun-miR4088......_385
MIMAT0022612ola-miR-130c1......_685
MIMAT0022611ola-miR-301b-3p1......_685
MIMAT0022238mtr-miR408-3p8......_385
MIMAT0022040aca-miR-54203_......885
MIMAT0022010aca-miR-54008_......385
MIMAT0021919aca-miR-302b3_......885
MIMAT0021918aca-miR-301b-3p1......_685
MIMAT0021916aca-miR-301a-3p1......_685
MIMAT0021744aca-miR-130c1......_685
MIMAT0021743aca-miR-130b-3p1......_685
MIMAT0021740aca-miR-130a-3p1......_685
MIMAT0021632gma-miR408c-3p8......_385
MIMAT0021631gma-miR408b-3p8......_385
MIMAT0021629gma-miR408a-3p8......_385
MIMAT0020297ssp-miR408a8......_385
MIMAT0020296ssp-miR408d8......_385
MIMAT0027039bdi-miR408-3p8......_385
MIMAT0019552pma-miR-430e3_......885
MIMAT0019551pma-miR-430d3_......885
MIMAT0019550pma-miR-430c3_......885
MIMAT0019548pma-miR-430a3_......885
MIMAT0019541pma-miR-430f3_......885
MIMAT0019538pma-miR-3023_......885
MIMAT0019537pma-miR-301b1......_685
MIMAT0019536pma-miR-301a1......_685
MIMAT0019457pma-miR-130c1......_685
MIMAT0019455pma-miR-130a-3p1......_685
MIMAT0019453pma-miR-130e1......_685
MIMAT0019452pma-miR-130d1......_685
MIMAT0019000hsa-miR-44733_......885
MIMAT0018472csi-miR4088......_385
MIMAT0018250gma-miR43581......_685
MIMAT0018088hsa-miR-36661......_685
MIMAT0016844hsa-miR-42951......_685
MIMAT0016415cin-miR-367-5p1_......685
MIMAT0016329ahy-miR408-3p8......_385
MIMAT0015974ppy-miR-520f2_......785
MIMAT0015973ppy-miR-520e3_......885
MIMAT0015972ppy-miR-520d-3p3_......885
MIMAT0015970ppy-miR-520c-3p3_......885
MIMAT0015968ppy-miR-520b3_......885
MIMAT0015967ppy-miR-520a-3p3_......885
MIMAT0015937ppy-miR-512-3p2_......785
MIMAT0015861ppy-miR-3733_......885
MIMAT0015860ppy-miR-3723_......885
MIMAT0015819ppy-miR-302d3_......885
MIMAT0015818ppy-miR-302c3_......885
MIMAT0015817ppy-miR-302b3_......885
MIMAT0015816ppy-miR-301b1......_685
MIMAT0015754ppy-miR-130b1......_685
MIMAT0015753ppy-miR-130a1......_685
MIMAT0017588aly-miR408-3p8......_385
MIMAT0014595tgu-miR-301-3p1......_685
MIMAT0014581tgu-miR-130c-3p1......_685
MIMAT0014578tgu-miR-130b-3p1......_685
MIMAT0014573tgu-miR-130a-3p1......_685
MIMAT0014569tgu-miR-29958......_385
MIMAT0014490tgu-miR-29808_......385
MIMAT0014204rco-miR4088......_385
MIMAT0014026zma-miR408b-3p8......_385
MIMAT0015335zma-miR393c-3p3......_885
MIMAT0013922ssc-miR-130b1......_685
MIMAT0013807ola-miR-430d3_......885
MIMAT0013806ola-miR-430b3_......885
MIMAT0013805ola-miR-430c3_......885
MIMAT0013804ola-miR-430a3_......885
MIMAT0013047eca-miR-130a1......_685
MIMAT0013032eca-miR-301a1......_685
MIMAT0013001eca-miR-301b-3p1......_685
MIMAT0012996eca-miR-130b1......_685
MIMAT0012914eca-miR-302d3_......885
MIMAT0012913eca-miR-302c3_......885
MIMAT0012912eca-miR-302b3_......885
MIMAT0012911eca-miR-302a3_......885
MIMAT0017366rno-miR-295-3p2_......785
MIMAT0012825rno-miR-1053_......885
MIMAT0012739mdo-miR-301-3p1......_685
MIMAT0013681bmo-miR-27853......_885
MIMAT0013601bmo-miR-11-5p7_......285
MIMAT0012041bta-miR-24568......_385
MIMAT0011980bta-miR-24163......_885
MIMAT0011961bta-miR-24048......_385
MIMAT0011361sbi-miR4088......_385
MIMAT0019173bfl-miR-2072-3p8_......385
MIMAT0009854cfa-miR-301b1......_685
MIMAT0009853cfa-miR-301a1......_685
MIMAT0017343mmu-miR-1947-3p6......_185
MIMAT0009281bta-miR-302c3_......885
MIMAT0009280bta-miR-302b3_......885
MIMAT0009279bta-miR-302d3_......885
MIMAT0009278bta-miR-302a2_......785
MIMAT0009277bta-miR-301b1......_685
MIMAT0009276bta-miR-301a1......_685
MIMAT0009224bta-miR-130b1......_685
MIMAT0009223bta-miR-130a1......_685
MIMAT0009085dya-miR-3096......_185
MIMAT0008894dsi-miR-3096......_185
MIMAT0008803dse-miR-3096......_185
MIMAT0008760dpe-miR-3096......_185
MIMAT0008487der-miR-3096......_185
MIMAT0008453dan-miR-3096......_185
MIMAT0008202ptr-miR-520f2_......785
MIMAT0008201ptr-miR-520e3_......885
MIMAT0008200ptr-miR-520d3_......885
MIMAT0008198ptr-miR-520b3_......885
MIMAT0008197ptr-miR-520a3_......885
MIMAT0008180ptr-miR-5122_......785
MIMAT0008122ptr-miR-3723_......885
MIMAT0008090ptr-miR-302e3_......885
MIMAT0008089ptr-miR-302d3_......885
MIMAT0008088ptr-miR-302c3_......885
MIMAT0008087ptr-miR-302b3_......885
MIMAT0008086ptr-miR-302a3_......885
MIMAT0008085ptr-miR-301b1......_685
MIMAT0008084ptr-miR-301a1......_685
MIMAT0008051ptr-miR-18253......_885
MIMAT0008026ptr-miR-130b1......_685
MIMAT0008025ptr-miR-130a1......_685
MIMAT0007758ssc-miR-130a1......_685
MIMAT0006765hsa-miR-18253......_885
MIMAT0006749cfa-miR-106a3_......885
MIMAT0006659cfa-miR-130b1......_685
MIMAT0006631cfa-miR-130a1......_685
MIMAT0006388mml-miR-520a-3p3_......885
MIMAT0006384mml-miR-519a-3p3_......885
MIMAT0006378mml-miR-518a-3p3_......885
MIMAT0006372mml-miR-512-3p2_......785
MIMAT0006299mml-miR-3733_......885
MIMAT0006298mml-miR-372-3p3_......885
MIMAT0006262mml-miR-302d3_......885
MIMAT0006261mml-miR-302c3_......885
MIMAT0006260mml-miR-302b3_......885
MIMAT0006259mml-miR-302a-3p3_......885
MIMAT0006258mml-miR-301b1......_685
MIMAT0006257mml-miR-301a-3p1......_685
MIMAT0006187mml-miR-130b-3p1......_685
MIMAT0007742gga-miR-301b-3p1......_685
MIMAT0007734gga-miR-130c-3p1......_685
MIMAT0007420gga-miR-1562-5p6......_185
MIMAT0007320oan-miR-1419f-5p1_......685
MIMAT0007240oan-miR-1419b-5p1_......685
MIMAT0007195oan-miR-302-3p3_......885
MIMAT0007159oan-miR-130b-3p1......_685
MIMAT0007110oan-miR-13783_......885
MIMAT0006926oan-miR-1420c-3p3_......885
MIMAT0006923oan-miR-1420a-3p3_......885
MIMAT0006910oan-miR-301-3p1......_685
MIMAT0006908oan-miR-130c-3p1......_685
MIMAT0005733vvi-miR4088......_385
MIMAT0005931hsa-miR-302e3_......885
MIMAT0005399cre-miR1153-5p.21_......685
MIMAT0005350tae-miR4088......_385
MIMAT0005329rno-miR-674-5p6......_185
MIMAT0005304rno-miR-301b-3p1......_685
MIMAT0005158ppt-miR10452_......785
MIMAT0005001pta-miR4088......_385
MIMAT0004356ppt-miR408a8......_385
MIMAT0004958hsa-miR-301b-3p1......_685
MIMAT0004183mdo-miR-302d3_......885
MIMAT0004182mdo-miR-302a3_......885
MIMAT0004181mdo-miR-302c3_......885
MIMAT0004180mdo-miR-302b3_......885
MIMAT0004178mdo-miR-93-5p3_......885
MIMAT0004106mdo-miR-130a-3p1......_685
MIMAT0012124sme-miR-750-5p6......_185
MIMAT0003709xtr-miR-428a3_......885
MIMAT0003660xtr-miR-93b2_......785
MIMAT0003659xtr-miR-93a3_......885
MIMAT0003636xtr-miR-3023_......885
MIMAT0003635xtr-miR-3011......_685
MIMAT0003593xtr-miR-130b1......_685
MIMAT0003592xtr-miR-130c1......_685
MIMAT0003591xtr-miR-130a1......_685
MIMAT0003515mmu-miR-7211......_685
MIMAT0003740mmu-miR-674-5p6......_185
MIMAT0004186mmu-miR-301b-3p1......_685
MIMAT0003377mmu-miR-302d-3p3_......885
MIMAT0003376mmu-miR-302c-3p2_......785
MIMAT0003374mmu-miR-302b-3p3_......885
MIMAT0003360gga-miR-302d3_......885
MIMAT0003359gga-miR-302c-3p3_......885
MIMAT0003357gga-miR-302b-3p3_......885
MIMAT0004811hsa-miR-33b-3p1......_685
MIMAT0002990tni-miR-1301......_685
MIMAT0002989fru-miR-1301......_685
MIMAT0002988tni-miR-3011......_685
MIMAT0002987fru-miR-3011......_685
MIMAT0002856hsa-miR-520d-3p3_......885
MIMAT0002846hsa-miR-520c-3p3_......885
MIMAT0002843hsa-miR-520b3_......885
MIMAT0002834hsa-miR-520a-3p3_......885
MIMAT0002830hsa-miR-520f-3p2_......785
MIMAT0002825hsa-miR-520e3_......885
MIMAT0002823hsa-miR-512-3p2_......785
MIMAT0002781mne-miR-933_......885
MIMAT0002778lla-miR-933_......885
MIMAT0002776sla-miR-933_......885
MIMAT0002773mml-miR-93-5p3_......885
MIMAT0002770ptr-miR-933_......885
MIMAT0002767ppy-miR-933_......885
MIMAT0002764ppa-miR-933_......885
MIMAT0002762age-miR-933_......885
MIMAT0002759ggo-miR-933_......885
MIMAT0002238ppa-miR-130a1......_685
MIMAT0002237mne-miR-130a1......_685
MIMAT0002236ggo-miR-130a1......_685
MIMAT0002235mml-miR-130a-3p1......_685
MIMAT0002058ptc-miR408-3p8......_385
MIMAT0001880dre-miR-430i-3p3_......885
MIMAT0001872dre-miR-301c-3p1......_685
MIMAT0001871dre-miR-301b-3p1......_685
MIMAT0001870dre-miR-301a1......_685
MIMAT0001828dre-miR-130c-3p1......_685
MIMAT0001827dre-miR-130b1......_685
MIMAT0001826dre-miR-130a1......_685
MIMAT0001748zma-miR408a8......_385
MIMAT0015207zma-miR393a-3p3......_885
MIMAT0001671sof-miR408e8......_385
MIMAT0001670sof-miR408d8......_385
MIMAT0001669sof-miR408c8......_385
MIMAT0001668sof-miR408b8......_385
MIMAT0001667sof-miR408a8......_385
MIMAT0001572mghv-miR-M1-8-5p6_......185
MIMAT0001425dre-miR-430c-3p3_......885
MIMAT0001424dre-miR-430b-3p3_......885
MIMAT0001423dre-miR-430a-3p3_......885
MIMAT0001345xla-miR-4283_......885
MIMAT0001344xla-miR-4273_......885
MIMAT0001259dps-miR-3096......_185
MIMAT0001167gga-miR-130a-3p1......_685
MIMAT0001166gga-miR-301a-3p1......_685
MIMAT0001165gga-miR-130b-3p1......_685
MIMAT0001143gga-miR-302a2_......785
MIMAT0001079osa-miR408-3p8......_385
MIMAT0001011ath-miR408-3p8......_385
MIMAT0000895rno-miR-291a-3p3_......885
MIMAT0000837rno-miR-130b-3p1......_685
MIMAT0000836rno-miR-130a-3p1......_685
MIMAT0004727rno-miR-106b-3p8......_385
MIMAT0026485hsa-miR-383-3p8_......385
MIMAT0000726hsa-miR-373-3p3_......885
MIMAT0000724hsa-miR-372-3p3_......885
MIMAT0000718hsa-miR-302d-3p3_......885
MIMAT0000717hsa-miR-302c-3p3_......885
MIMAT0000715hsa-miR-302b-3p3_......885
MIMAT0000691hsa-miR-130b-3p1......_685
MIMAT0000688hsa-miR-301a-3p1......_685
MIMAT0000684hsa-miR-302a-3p3_......885
MIMAT0004672hsa-miR-106b-3p8......_385
MIMAT0000552rno-miR-301a-3p1......_685
MIMAT0000425hsa-miR-130a-3p1......_685
MIMAT0000401dme-miR-309-3p6......_185
MIMAT0000387mmu-miR-130b-3p1......_685
MIMAT0004582mmu-miR-106b-3p8......_385
MIMAT0000380mmu-miR-302a-3p3_......885
MIMAT0000379mmu-miR-301a-3p1......_685
MIMAT0000373mmu-miR-295-3p3_......885
MIMAT0000372mmu-miR-294-3p3_......885
MIMAT0000368mmu-miR-291a-3p3_......885
MIMAT0000141mmu-miR-130a-3p1......_685