| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | catagtga | 8 | ||
| MIMAT0012545 | mdv2-miR-M29-3p | 1 | ........ | 8 | 100 |
| MIMAT0037055 | ssc-miR-9837-5p | 7 | _....... | 1 | 87 |
| MIMAT0024506 | mse-miR-6098 | 1 | _....... | 7 | 87 |
| MIMAT0005230 | smo-miR1080 | 8 | _....... | 2 | 87 |
| MIMAT0036477 | tch-miR-9771b | 7 | ......__ | 2 | 75 |
| MIMAT0036170 | chi-miR-34c-3p | 8 | __...... | 3 | 75 |
| MIMAT0036168 | chi-miR-34b-3p | 8 | __...... | 3 | 75 |
| MIMAT0035681 | bra-miR9562-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035632 | dvi-miR-9541-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035614 | dvi-miR-999-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035046 | efu-miR-34c | 8 | __...... | 3 | 75 |
| MIMAT0034004 | gra-miR8646 | 1 | __...... | 6 | 75 |
| MIMAT0033318 | str-miR-71-3p | 8 | __...... | 3 | 75 |
| MIMAT0033189 | ppc-miR-8364m-3p | 3 | _......_ | 8 | 75 |
| MIMAT0033181 | ppc-miR-8320-3p | 6 | __...... | 1 | 75 |
| MIMAT0033142 | ppc-miR-8229b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0033007 | ppc-miR-71b-3p | 8 | __...... | 3 | 75 |
| MIMAT0032947 | ppc-miR-8243-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032944 | ppc-miR-312b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0032861 | ppc-miR-8215a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0030708 | prd-miR-7930-5p | 8 | ......__ | 3 | 75 |
| MIMAT0030461 | prd-miR-71-3p | 8 | __...... | 3 | 75 |
| MIMAT0030298 | bdi-miR7774-5p | 6 | ......__ | 1 | 75 |
| MIMAT0029505 | ipu-miR-34c | 8 | __...... | 3 | 75 |
| MIMAT0028989 | oan-miR-34b-3p | 8 | __...... | 3 | 75 |
| MIMAT0028960 | oan-miR-7407-5p | 1 | __...... | 6 | 75 |
| MIMAT0028833 | mdo-miR-7385d-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028829 | mdo-miR-7385b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028589 | mdo-miR-34b-3p | 8 | __...... | 3 | 75 |
| MIMAT0028587 | mdo-miR-34c-3p | 8 | __...... | 3 | 75 |
| MIMAT0026389 | sbi-miR5568b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026378 | bma-miR-5879a | 2 | ......__ | 7 | 75 |
| MIMAT0026373 | bma-miR-5874 | 8 | _......_ | 3 | 75 |
| MIMAT0026313 | ccr-miR-726 | 7 | __...... | 2 | 75 |
| MIMAT0025211 | ptc-miR6472 | 1 | __...... | 6 | 75 |
| MIMAT0025018 | hme-miR-6311-3p | 1 | __...... | 6 | 75 |
| MIMAT0024985 | hme-miR-71 | 8 | __...... | 3 | 75 |
| MIMAT0027316 | ppe-miR6285 | 1 | __...... | 6 | 75 |
| MIMAT0024407 | ppy-miR-3174 | 1 | __...... | 6 | 75 |
| MIMAT0023930 | cgr-miR-34c-3p | 8 | __...... | 3 | 75 |
| MIMAT0023928 | cgr-miR-34b-3p | 8 | __...... | 3 | 75 |
| MIMAT0023698 | hsa-miR-6073 | 3 | __...... | 8 | 75 |
| MIMAT0023383 | hco-miR-5914 | 1 | __...... | 6 | 75 |
| MIMAT0023041 | tur-miR-71-3p | 8 | __...... | 3 | 75 |
| MIMAT0022365 | mmu-miR-5619-5p | 8 | __...... | 3 | 75 |
| MIMAT0021986 | aca-miR-726 | 7 | __...... | 2 | 75 |
| MIMAT0021944 | aca-miR-34c-3p | 8 | __...... | 3 | 75 |
| MIMAT0021940 | aca-miR-34a-3p | 7 | __...... | 2 | 75 |
| MIMAT0021467 | asu-miR-71-3p | 8 | __...... | 3 | 75 |
| MIMAT0021018 | hsa-miR-4999-3p | 6 | __...... | 1 | 75 |
| MIMAT0019848 | hsa-miR-4727-3p | 1 | _......_ | 6 | 75 |
| MIMAT0018982 | hsa-miR-4460 | 1 | _......_ | 6 | 75 |
| MIMAT0017983 | hsa-miR-3606-5p | 2 | __...... | 7 | 75 |
| MIMAT0027033 | tgu-miR-34c-3p | 8 | __...... | 3 | 75 |
| MIMAT0016664 | cin-miR-4088-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017871 | rno-miR-3596b | 7 | ......__ | 2 | 75 |
| MIMAT0016131 | ppy-miR-921 | 2 | __...... | 7 | 75 |
| MIMAT0015743 | ppy-miR-34c-3p | 8 | __...... | 3 | 75 |
| MIMAT0015051 | hsa-miR-3174 | 1 | __...... | 6 | 75 |
| MIMAT0017389 | tgu-miR-338-5p | 8 | _......_ | 3 | 75 |
| MIMAT0014447 | cel-miR-2953-3p | 8 | __...... | 3 | 75 |
| MIMAT0014401 | cqu-miR-71-3p | 8 | __...... | 3 | 75 |
| MIMAT0014221 | aae-miR-71-3p | 8 | __...... | 3 | 75 |
| MIMAT0016945 | rlcv-miR-rL1-23-5p | 6 | __...... | 1 | 75 |
| MIMAT0012991 | eca-miR-34b-3p | 8 | __...... | 3 | 75 |
| MIMAT0013758 | bmo-miR-2841 | 3 | ......__ | 8 | 75 |
| MIMAT0013325 | mtr-miR2612 | 3 | _......_ | 8 | 75 |
| MIMAT0012455 | dsi-miR-999-5p | 2 | ......__ | 7 | 75 |
| MIMAT0011619 | crm-miR-71-3p | 8 | __...... | 3 | 75 |
| MIMAT0010130 | ebv-miR-BART21-5p | 6 | __...... | 1 | 75 |
| MIMAT0019109 | tca-miR-71-3p | 8 | __...... | 3 | 75 |
| MIMAT0008114 | ptr-miR-34c | 8 | __...... | 3 | 75 |
| MIMAT0006430 | mml-miR-567 | 6 | ......__ | 1 | 75 |
| MIMAT0006176 | mml-miR-34c-3p | 8 | __...... | 3 | 75 |
| MIMAT0007687 | gga-miR-1776 | 3 | __...... | 8 | 75 |
| MIMAT0007239 | oan-miR-1421w-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007109 | oan-miR-34a-3p | 8 | __...... | 3 | 75 |
| MIMAT0007079 | oan-miR-1421p-3p | 3 | ......__ | 8 | 75 |
| MIMAT0006974 | oan-miR-1421f-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005356 | tae-miR1121 | 3 | __...... | 8 | 75 |
| MIMAT0020899 | dme-miR-999-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004971 | hsa-miR-921 | 2 | __...... | 7 | 75 |
| MIMAT0032011 | dre-miR-34c-3p | 8 | __...... | 3 | 75 |
| MIMAT0003754 | dre-miR-726 | 7 | __...... | 2 | 75 |
| MIMAT0003903 | ppt-miR1214 | 7 | ......__ | 2 | 75 |
| MIMAT0026541 | gga-miR-34c-3p | 8 | __...... | 3 | 75 |
| MIMAT0026540 | gga-miR-34b-3p | 8 | __...... | 3 | 75 |
| MIMAT0004723 | rno-miR-34c-3p | 8 | __...... | 3 | 75 |
| MIMAT0017105 | rno-miR-34b-3p | 8 | __...... | 3 | 75 |
| MIMAT0004677 | hsa-miR-34c-3p | 8 | __...... | 3 | 75 |
| MIMAT0004581 | mmu-miR-34b-3p | 8 | __...... | 3 | 75 |
| MIMAT0004580 | mmu-miR-34c-3p | 8 | __...... | 3 | 75 |
| MIMAT0015107 | cel-miR-71-3p | 8 | __...... | 3 | 75 |
