| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccagaggc | 8 | ||
| MIMAT0029123 | hcmv-miR-UL69 | 1 | ........ | 8 | 100 |
| MIMAT0011798 | bta-miR-2290 | 8 | ........ | 1 | 100 |
| MIMAT0036763 | oha-miR-181b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0036601 | tch-miR-326 | 7 | ......._ | 1 | 87 |
| MIMAT0036138 | chi-miR-326-3p | 7 | ......._ | 1 | 87 |
| MIMAT0034367 | cfa-miR-8870 | 8 | _....... | 2 | 87 |
| MIMAT0031644 | bbe-miR-210-3p | 8 | _....... | 2 | 87 |
| MIMAT0028737 | mdo-miR-7362-3p | 1 | ......._ | 7 | 87 |
| MIMAT0028075 | mmu-miR-7084-3p | 7 | _....... | 1 | 87 |
| MIMAT0028032 | mmu-miR-7064-5p | 2 | _....... | 8 | 87 |
| MIMAT0024215 | ggo-miR-326 | 7 | ......._ | 1 | 87 |
| MIMAT0023913 | cgr-miR-326 | 7 | ......._ | 1 | 87 |
| MIMAT0016878 | hsa-miR-4257 | 1 | ......._ | 7 | 87 |
| MIMAT0015830 | ppy-miR-326 | 7 | ......._ | 1 | 87 |
| MIMAT0012989 | eca-miR-326 | 7 | ......._ | 1 | 87 |
| MIMAT0009894 | cfa-miR-326 | 7 | ......._ | 1 | 87 |
| MIMAT0019149 | bfl-miR-210-5p | 8 | _....... | 2 | 87 |
| MIMAT0009286 | bta-miR-326 | 7 | ......._ | 1 | 87 |
| MIMAT0008099 | ptr-miR-326 | 7 | ......._ | 1 | 87 |
| MIMAT0026896 | mml-miR-520a-5p | 2 | ......._ | 8 | 87 |
| MIMAT0007664 | gga-miR-1757 | 2 | _....... | 8 | 87 |
| MIMAT0007591 | gga-miR-1699 | 1 | ......._ | 7 | 87 |
| MIMAT0007581 | gga-miR-1690-5p | 2 | ......._ | 8 | 87 |
| MIMAT0002140 | ssc-miR-326 | 7 | ......._ | 1 | 87 |
| MIMAT0000756 | hsa-miR-326 | 7 | ......._ | 1 | 87 |
| MIMAT0000560 | rno-miR-326-3p | 7 | ......._ | 1 | 87 |
| MIMAT0000559 | mmu-miR-326-3p | 7 | ......._ | 1 | 87 |
| MIMAT0036809 | oha-miR-202-3p | 1 | __...... | 6 | 75 |
| MIMAT0036421 | ggo-miR-518c-5p | 7 | ......__ | 2 | 75 |
| MIMAT0036412 | ggo-miR-525-5p | 3 | ......__ | 8 | 75 |
| MIMAT0036244 | chi-miR-485-5p | 1 | __...... | 6 | 75 |
| MIMAT0036143 | chi-miR-330-5p | 7 | ......__ | 2 | 75 |
| MIMAT0036081 | chi-miR-2290 | 8 | __...... | 3 | 75 |
| MIMAT0034825 | efu-miR-9242 | 8 | _......_ | 3 | 75 |
| MIMAT0034812 | efu-miR-9220 | 7 | ......__ | 2 | 75 |
| MIMAT0034752 | eca-miR-9172 | 7 | ......__ | 2 | 75 |
| MIMAT0034556 | eca-miR-9015 | 3 | ......__ | 8 | 75 |
| MIMAT0034521 | eca-miR-8984 | 6 | ......__ | 1 | 75 |
| MIMAT0034512 | eca-miR-8975 | 2 | ......__ | 7 | 75 |
| MIMAT0034434 | cfa-miR-8906 | 7 | _......_ | 2 | 75 |
| MIMAT0034376 | cfa-miR-8876 | 8 | __...... | 3 | 75 |
| MIMAT0034342 | cfa-miR-8847 | 3 | ......__ | 8 | 75 |
| MIMAT0033946 | atr-miR477 | 1 | __...... | 6 | 75 |
| MIMAT0032759 | ssa-miR-8164-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032482 | ssa-miR-202-5p | 3 | __...... | 8 | 75 |
| MIMAT0032284 | ssa-miR-103-5p | 7 | __...... | 2 | 75 |
| MIMAT0031852 | cpa-miR8154 | 1 | _......_ | 6 | 75 |
| MIMAT0030635 | prd-miR-7909-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030592 | prd-miR-240-5p | 2 | ......__ | 7 | 75 |
| MIMAT0030101 | bdi-miR5174b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0030068 | bdi-miR5174e-5p.1 | 6 | _......_ | 1 | 75 |
| MIMAT0029023 | oan-miR-7422b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028850 | mdo-miR-7386d-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028823 | mdo-miR-7383-3p | 1 | __...... | 6 | 75 |
| MIMAT0028820 | mdo-miR-7382-5p | 1 | __...... | 6 | 75 |
| MIMAT0028625 | mdo-miR-7312-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028305 | mml-miR-7180-3p | 8 | __...... | 3 | 75 |
| MIMAT0028282 | mml-miR-7172-5p | 8 | __...... | 3 | 75 |
| MIMAT0027827 | mmu-miR-6963-3p | 7 | __...... | 2 | 75 |
| MIMAT0027769 | mmu-miR-6934-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027668 | hsa-miR-6884-5p | 1 | __...... | 6 | 75 |
| MIMAT0027655 | hsa-miR-6877-3p | 8 | __...... | 3 | 75 |
| MIMAT0027646 | hsa-miR-6873-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027632 | hsa-miR-6866-5p | 3 | __...... | 8 | 75 |
| MIMAT0027594 | hsa-miR-6847-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027549 | hsa-miR-6824-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027539 | hsa-miR-6819-3p | 8 | __...... | 3 | 75 |
| MIMAT0027463 | hsa-miR-6781-3p | 7 | __...... | 2 | 75 |
| MIMAT0027461 | hsa-miR-6780a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027429 | hsa-miR-6764-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027390 | hsa-miR-6744-3p | 8 | __...... | 3 | 75 |
| MIMAT0025778 | gga-miR-6675-3p | 7 | ......__ | 2 | 75 |
| MIMAT0025744 | gga-miR-6647-5p | 8 | ......__ | 3 | 75 |
| MIMAT0025714 | gga-miR-6618-5p | 1 | __...... | 6 | 75 |
| MIMAT0025672 | gga-miR-6582-3p | 8 | ......__ | 3 | 75 |
| MIMAT0025666 | gga-miR-6579-3p | 1 | __...... | 6 | 75 |
| MIMAT0025459 | hsa-miR-6501-3p | 1 | ......__ | 6 | 75 |
| MIMAT0024968 | hme-miR-282 | 8 | __...... | 3 | 75 |
| MIMAT0027329 | ppe-miR6293 | 3 | __...... | 8 | 75 |
| MIMAT0024444 | mse-miR-282 | 8 | __...... | 3 | 75 |
| MIMAT0024401 | ppy-miR-3188 | 1 | __...... | 6 | 75 |
| MIMAT0024102 | ggo-miR-485 | 1 | __...... | 6 | 75 |
| MIMAT0023881 | cgr-miR-298-5p | 3 | _......_ | 8 | 75 |
| MIMAT0023672 | ame-miR-6048 | 1 | __...... | 6 | 75 |
| MIMAT0023666 | ame-miR-6044 | 2 | __...... | 7 | 75 |
| MIMAT0023576 | tca-miR-6017-3p | 6 | __...... | 1 | 75 |
| MIMAT0022148 | osa-miR5514 | 3 | ......__ | 8 | 75 |
| MIMAT0021850 | aca-miR-202-3p.1 | 1 | __...... | 6 | 75 |
| MIMAT0021292 | mtr-miR5268b | 1 | ......__ | 6 | 75 |
| MIMAT0021291 | mtr-miR5268a | 1 | ......__ | 6 | 75 |
| MIMAT0020722 | bdi-miR5175b | 6 | _......_ | 1 | 75 |
| MIMAT0020621 | mmu-miR-5113 | 2 | _......_ | 7 | 75 |
| MIMAT0021059 | gma-miR5036 | 1 | __...... | 6 | 75 |
| MIMAT0020440 | tcc-miR399f | 3 | ......__ | 8 | 75 |
| MIMAT0019953 | hsa-miR-2467-3p | 3 | _......_ | 8 | 75 |
| MIMAT0019901 | hsa-miR-4757-5p | 8 | __...... | 3 | 75 |
| MIMAT0019900 | hsa-miR-4756-3p | 1 | ......__ | 6 | 75 |
| MIMAT0019557 | pma-miR-497-3p | 1 | ......__ | 6 | 75 |
| MIMAT0019442 | pma-miR-103b-5p | 7 | __...... | 2 | 75 |
| MIMAT0019312 | oar-miR-485-5p | 1 | __...... | 6 | 75 |
| MIMAT0018326 | gma-miR4407 | 1 | _......_ | 6 | 75 |
| MIMAT0018915 | smr-miR-282 | 8 | __...... | 3 | 75 |
| MIMAT0018880 | tca-miR-3891-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018701 | tca-miR-3834-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016868 | hsa-miR-4314 | 6 | ......__ | 1 | 75 |
| MIMAT0016820 | cin-miR-4200-3p | 6 | _......_ | 1 | 75 |
| MIMAT0016435 | cin-miR-4000e-3p | 7 | __...... | 2 | 75 |
| MIMAT0016390 | gga-miR-3539 | 1 | _......_ | 6 | 75 |
| MIMAT0016365 | vvi-miR2111-3p | 8 | _......_ | 3 | 75 |
| MIMAT0015982 | ppy-miR-525-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015969 | ppy-miR-520c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015966 | ppy-miR-520a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015955 | ppy-miR-518d-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015902 | ppy-miR-485-5p | 1 | __...... | 6 | 75 |
| MIMAT0015833 | ppy-miR-330-5p | 7 | ......__ | 2 | 75 |
| MIMAT0015404 | bmo-miR-3223-3p | 8 | ......__ | 3 | 75 |
| MIMAT0022732 | hsa-miR-3191-5p | 8 | ......__ | 3 | 75 |
| MIMAT0015070 | hsa-miR-3188 | 1 | __...... | 6 | 75 |
| MIMAT0015063 | hsa-miR-3183 | 6 | __...... | 1 | 75 |
| MIMAT0016943 | rlcv-miR-rL1-21-3p | 8 | __...... | 3 | 75 |
| MIMAT0013159 | eca-miR-485-5p | 1 | __...... | 6 | 75 |
| MIMAT0013012 | eca-miR-330 | 7 | ......__ | 2 | 75 |
| MIMAT0013518 | hsa-miR-2682-3p | 7 | __...... | 2 | 75 |
| MIMAT0012052 | bta-miR-2464-3p | 3 | ......__ | 8 | 75 |
| MIMAT0011922 | bta-miR-2376 | 6 | _......_ | 1 | 75 |
| MIMAT0011882 | bta-miR-2347 | 3 | _......_ | 8 | 75 |
| MIMAT0026921 | hsa-miR-2276-5p | 8 | _......_ | 3 | 75 |
| MIMAT0009893 | cfa-miR-330 | 7 | ......__ | 2 | 75 |
| MIMAT0009814 | nve-miR-2045-5p | 3 | ......__ | 8 | 75 |
| MIMAT0009435 | mmu-miR-1962 | 1 | __...... | 6 | 75 |
| MIMAT0009390 | mmu-miR-1927 | 8 | _......_ | 3 | 75 |
| MIMAT0009328 | bta-miR-485 | 1 | __...... | 6 | 75 |
| MIMAT0008386 | tca-miR-282-5p | 8 | __...... | 3 | 75 |
| MIMAT0006725 | cfa-miR-485 | 1 | __...... | 6 | 75 |
| MIMAT0006402 | mml-miR-525 | 3 | ......__ | 8 | 75 |
| MIMAT0006342 | mml-miR-485-5p | 1 | __...... | 6 | 75 |
| MIMAT0006270 | mml-miR-330-5p | 7 | ......__ | 2 | 75 |
| MIMAT0007684 | gga-miR-1773-3p | 3 | __...... | 8 | 75 |
| MIMAT0007595 | gga-miR-1703-5p | 1 | __...... | 6 | 75 |
| MIMAT0007528 | gga-miR-1650 | 7 | _......_ | 2 | 75 |
| MIMAT0007517 | gga-miR-1642 | 3 | __...... | 8 | 75 |
| MIMAT0007484 | gga-miR-1617 | 1 | __...... | 6 | 75 |
| MIMAT0007451 | gga-miR-1589 | 8 | __...... | 3 | 75 |
| MIMAT0007424 | gga-miR-1564-3p | 8 | _......_ | 3 | 75 |
| MIMAT0006017 | hiv1-miR-TAR-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026748 | mml-miR-514a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0005287 | rno-miR-879-5p | 1 | __...... | 6 | 75 |
| MIMAT0005252 | smo-miR1096 | 8 | __...... | 3 | 75 |
| MIMAT0004842 | mmu-miR-879-5p | 1 | __...... | 6 | 75 |
| MIMAT0003355 | gga-miR-202-3p | 1 | __...... | 6 | 75 |
| MIMAT0003203 | rno-miR-485-5p | 1 | __...... | 6 | 75 |
| MIMAT0003128 | mmu-miR-485-5p | 1 | __...... | 6 | 75 |
| MIMAT0003074 | tni-miR-202 | 1 | __...... | 6 | 75 |
| MIMAT0003073 | fru-miR-202 | 1 | __...... | 6 | 75 |
| MIMAT0022702 | hsa-miR-514a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0002847 | hsa-miR-518c-5p | 7 | ......__ | 2 | 75 |
| MIMAT0002838 | hsa-miR-525-5p | 3 | ......__ | 8 | 75 |
| MIMAT0002833 | hsa-miR-520a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0002175 | hsa-miR-485-5p | 1 | __...... | 6 | 75 |
| MIMAT0001864 | dre-miR-202-3p | 1 | __...... | 6 | 75 |
| MIMAT0000900 | rno-miR-298-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004693 | hsa-miR-330-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004642 | mmu-miR-330-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004641 | rno-miR-330-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004608 | hsa-miR-146a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0000376 | mmu-miR-298-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000346 | dme-miR-282-5p | 8 | __...... | 3 | 75 |
