| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cccccgca | 8 | ||
| MIMAT0035713 | bhv5-miR-B11 | 7 | ......._ | 1 | 87 |
| MIMAT0034644 | eca-miR-744 | 7 | _....... | 1 | 87 |
| MIMAT0024002 | cgr-miR-744-5p | 7 | _....... | 1 | 87 |
| MIMAT0019956 | hsa-miR-4787-5p | 7 | ......._ | 1 | 87 |
| MIMAT0019885 | hsa-miR-4749-5p | 7 | _....... | 1 | 87 |
| MIMAT0016102 | ppy-miR-744 | 7 | _....... | 1 | 87 |
| MIMAT0015708 | ssc-miR-744 | 7 | _....... | 1 | 87 |
| MIMAT0009369 | bta-miR-744 | 7 | _....... | 1 | 87 |
| MIMAT0008317 | ptr-miR-744 | 7 | _....... | 1 | 87 |
| MIMAT0007679 | gga-miR-1770 | 8 | _....... | 2 | 87 |
| MIMAT0004945 | hsa-miR-744-5p | 7 | _....... | 1 | 87 |
| MIMAT0004187 | mmu-miR-744-5p | 7 | _....... | 1 | 87 |
| MIMAT0025162 | mmu-miR-6409 | 8 | .a...... | 1 | 87 |
| MIMAT0036161 | chi-miR-3432-5p | 6 | __...... | 1 | 75 |
| MIMAT0035752 | rno-miR-762 | 6 | _......_ | 1 | 75 |
| MIMAT0035711 | bhv5-miR-B14 | 6 | ......__ | 1 | 75 |
| MIMAT0034826 | efu-miR-9224 | 2 | ......__ | 7 | 75 |
| MIMAT0034798 | efu-miR-9208 | 3 | ......__ | 8 | 75 |
| MIMAT0034786 | efu-miR-9200b | 8 | ......__ | 3 | 75 |
| MIMAT0034533 | eca-miR-8994 | 2 | _......_ | 7 | 75 |
| MIMAT0030648 | prd-miR-7911b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030646 | prd-miR-7911a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0029902 | mmu-miR-7687-5p | 8 | _......_ | 3 | 75 |
| MIMAT0029808 | mmu-miR-7036b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028149 | ssc-miR-7137-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028127 | mmu-miR-7115-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027976 | mmu-miR-7036a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027672 | hsa-miR-6886-5p | 1 | __...... | 6 | 75 |
| MIMAT0027582 | hsa-miR-6840-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027474 | hsa-miR-6787-5p | 8 | _......_ | 3 | 75 |
| MIMAT0025310 | prv-miR-LLT7 | 7 | ......__ | 2 | 75 |
| MIMAT0022191 | cel-miR-5550-5p | 1 | _......_ | 6 | 75 |
| MIMAT0022017 | aca-miR-5404 | 2 | ......__ | 7 | 75 |
| MIMAT0019942 | hsa-miR-4781-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019859 | hsa-miR-4734 | 8 | __...... | 3 | 75 |
| MIMAT0019806 | hsa-miR-4706 | 7 | _......_ | 2 | 75 |
| MIMAT0019665 | pma-miR-4631 | 6 | __...... | 1 | 75 |
| MIMAT0019623 | pma-miR-4590 | 7 | ......__ | 2 | 75 |
| MIMAT0019601 | pma-miR-4569 | 2 | __...... | 7 | 75 |
| MIMAT0019045 | hsa-miR-4508 | 6 | _......_ | 1 | 75 |
| MIMAT0016879 | hsa-miR-4258 | 1 | _......_ | 6 | 75 |
| MIMAT0016696 | cin-miR-4109-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017876 | rno-miR-3584-3p | 2 | __...... | 7 | 75 |
| MIMAT0016237 | ppy-miR-1908 | 8 | _......_ | 3 | 75 |
| MIMAT0017396 | bta-miR-3432a | 6 | __...... | 1 | 75 |
| MIMAT0012600 | bmo-miR-2724 | 2 | ......__ | 7 | 75 |
| MIMAT0012598 | hsv1-miR-H8-3p | 2 | ......__ | 7 | 75 |
| MIMAT0013564 | cte-miR-2701 | 1 | __...... | 6 | 75 |
| MIMAT0012207 | dme-miR-2496-3p | 6 | _......_ | 1 | 75 |
| MIMAT0011817 | bta-miR-2305 | 6 | ......__ | 1 | 75 |
| MIMAT0008309 | ptr-miR-663a | 8 | _......_ | 3 | 75 |
| MIMAT0007881 | hsa-miR-1908-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007867 | mmu-miR-1895 | 1 | ......__ | 6 | 75 |
| MIMAT0006502 | mml-miR-663 | 8 | _......_ | 3 | 75 |
| MIMAT0007613 | gga-miR-1716 | 7 | _......_ | 2 | 75 |
| MIMAT0007023 | oan-miR-1362-5p | 3 | _......_ | 8 | 75 |
| MIMAT0022946 | hsa-miR-1237-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004239 | ath-miR822-5p | 6 | __...... | 1 | 75 |
| MIMAT0003326 | hsa-miR-663a | 8 | _......_ | 3 | 75 |
| MIMAT0020310 | cel-miR-50-3p | 1 | __...... | 6 | 75 |
