| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccgaaac | 7 | ||
| MIMAT0035214 | dme-miR-9375-3p | 1 | ....... | 7 | 100 |
| MIMAT0022499 | hsa-miR-5705 | 8 | ....... | 2 | 100 |
| MIMAT0014875 | mmu-miR-3083-3p | 2 | ....... | 8 | 100 |
| MIMAT0036957 | oha-miR-9-4-5p | 8 | ......_ | 3 | 85 |
| MIMAT0035764 | tae-miR9654b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0035323 | gsa-miR-9390-3p | 2 | _...... | 7 | 85 |
| MIMAT0030210 | bdi-miR7737-5p | 6 | ......_ | 1 | 85 |
| MIMAT0029351 | lja-miR7528 | 1 | ......_ | 6 | 85 |
| MIMAT0025165 | mmu-miR-6412 | 2 | _...... | 7 | 85 |
| MIMAT0023310 | osa-miR5835 | 2 | _...... | 7 | 85 |
| MIMAT0023162 | gma-miR5765 | 1 | _...... | 6 | 85 |
| MIMAT0022323 | cin-miR-5600-5p | 2 | _...... | 7 | 85 |
| MIMAT0022022 | aca-miR-5407-5p | 6 | ......_ | 1 | 85 |
| MIMAT0021492 | asu-miR-100c-3p | 8 | _...... | 3 | 85 |
| MIMAT0021016 | gma-miR4998 | 7 | _...... | 2 | 85 |
| MIMAT0018491 | csi-miR3950 | 8 | ......_ | 3 | 85 |
| MIMAT0018138 | pab-miR3706 | 6 | ......_ | 1 | 85 |
| MIMAT0016430 | cin-miR-4000a-5p | 1 | _...... | 6 | 85 |
| MIMAT0015546 | bmo-miR-3360 | 6 | ......_ | 1 | 85 |
| MIMAT0013348 | mtr-miR2627 | 6 | ......_ | 1 | 85 |
| MIMAT0001002 | ath-miR401 | 1 | _...... | 6 | 85 |
