| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccgcgct | 7 | ||
| MIMAT0022682 | hvsa-miR-HSUR5-5p | 2 | ....... | 8 | 100 |
| MIMAT0017352 | hsa-miR-2277-5p | 7 | ....... | 1 | 100 |
| MIMAT0037029 | ssc-miR-9811-5p | 1 | _...... | 6 | 85 |
| MIMAT0035797 | tae-miR5384-3p | 8 | _...... | 3 | 85 |
| MIMAT0034529 | eca-miR-8992 | 1 | _...... | 6 | 85 |
| MIMAT0030796 | prd-miR-7955-5p | 6 | _...... | 1 | 85 |
| MIMAT0029108 | gga-miR-7477-5p | 8 | _...... | 3 | 85 |
| MIMAT0029064 | gga-miR-7455-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027639 | hsa-miR-6869-3p | 3 | ......_ | 8 | 85 |
| MIMAT0016373 | gga-miR-3523 | 1 | ......_ | 6 | 85 |
| MIMAT0016137 | ppy-miR-937 | 3 | ......_ | 8 | 85 |
| MIMAT0014708 | hsv2-miR-H25 | 8 | ......_ | 3 | 85 |
| MIMAT0014208 | aae-miR-275-5p | 1 | _...... | 6 | 85 |
| MIMAT0013861 | bta-miR-2903 | 3 | ......_ | 8 | 85 |
| MIMAT0013053 | eca-miR-675 | 8 | ......_ | 3 | 85 |
| MIMAT0032091 | dvi-miR-275-5p | 1 | _...... | 6 | 85 |
| MIMAT0008344 | ptr-miR-937 | 3 | ......_ | 8 | 85 |
| MIMAT0006966 | oan-miR-1421b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0004980 | hsa-miR-937-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015231 | bmo-miR-275-5p | 1 | _...... | 6 | 85 |
| MIMAT0020801 | dme-miR-275-5p | 1 | _...... | 6 | 85 |
