| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccgggaac | 8 | ||
| MIMAT0035722 | rno-miR-1247-3p | 1 | _....... | 7 | 87 |
| MIMAT0034591 | eca-miR-9047 | 8 | _....... | 2 | 87 |
| MIMAT0028359 | mml-miR-1247-3p | 1 | _....... | 7 | 87 |
| MIMAT0025550 | bta-miR-1247-3p | 1 | _....... | 7 | 87 |
| MIMAT0015287 | bmo-miR-190-3p | 2 | ......._ | 8 | 87 |
| MIMAT0014801 | mmu-miR-1247-3p | 1 | _....... | 7 | 87 |
| MIMAT0037150 | ata-miR395b-5p | 8 | .a...... | 1 | 87 |
| MIMAT0037014 | ssc-miR-9796-3p | 1 | .a...... | 8 | 87 |
| MIMAT0029630 | crm-miR-7611 | 1 | .t...... | 8 | 87 |
| MIMAT0027544 | hsa-miR-6822-5p | 1 | .a...... | 8 | 87 |
| MIMAT0027400 | hsa-miR-6750-5p | 1 | .a...... | 8 | 87 |
| MIMAT0025725 | gga-miR-6629-5p | 1 | .t...... | 8 | 87 |
| MIMAT0021630 | gma-miR408b-5p | 1 | .t...... | 8 | 87 |
| MIMAT0027096 | bdi-miR395n-5p | 8 | .a...... | 1 | 87 |
| MIMAT0027095 | bdi-miR395l-5p | 8 | .a...... | 1 | 87 |
| MIMAT0027094 | bdi-miR395k-5p | 8 | .a...... | 1 | 87 |
| MIMAT0027092 | bdi-miR395h-5p | 8 | .a...... | 1 | 87 |
| MIMAT0027074 | bdi-miR395c-5p | 8 | .a...... | 1 | 87 |
| MIMAT0016328 | ahy-miR408-5p | 1 | .t...... | 8 | 87 |
| MIMAT0017587 | aly-miR408-5p | 1 | .a...... | 8 | 87 |
| MIMAT0022913 | ptc-miR408-5p | 1 | .g...... | 8 | 87 |
| MIMAT0015165 | zma-miR395c-5p | 8 | .a...... | 1 | 87 |
| MIMAT0037220 | ata-miR2118b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0037184 | ata-miR395f-5p | 6 | __...... | 1 | 75 |
| MIMAT0037164 | ata-miR395d-5p | 7 | __...... | 2 | 75 |
| MIMAT0037162 | ata-miR395a-5p | 6 | __...... | 1 | 75 |
| MIMAT0036973 | bta-miR-4449 | 8 | ......__ | 3 | 75 |
| MIMAT0035664 | bra-miR9555a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0034817 | efu-miR-9223f | 3 | ......__ | 8 | 75 |
| MIMAT0034792 | efu-miR-9205 | 7 | ......__ | 2 | 75 |
| MIMAT0033544 | sma-miR-8420-5p | 2 | __...... | 7 | 75 |
| MIMAT0032793 | cel-miR-8190-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032787 | cel-miR-8187-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032683 | ssa-miR-731-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032603 | ssa-miR-30a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031711 | bbe-miR-4904-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031696 | bbe-miR-4873-5p | 7 | __...... | 2 | 75 |
| MIMAT0031493 | ppe-miR395o | 6 | __...... | 1 | 75 |
| MIMAT0031479 | ppe-miR395b-5p | 6 | __...... | 1 | 75 |
| MIMAT0031477 | ppe-miR395a-5p | 6 | __...... | 1 | 75 |
| MIMAT0030986 | hsa-miR-8059 | 2 | __...... | 7 | 75 |
| MIMAT0030405 | ptc-miR7832 | 8 | __...... | 3 | 75 |
| MIMAT0030273 | bdi-miR7763-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028825 | mdo-miR-7384-3p | 2 | __...... | 7 | 75 |
| MIMAT0028662 | mdo-miR-505-5p | 3 | __...... | 8 | 75 |
| MIMAT0028371 | mml-miR-7203-3p | 1 | ......__ | 6 | 75 |
| MIMAT0028312 | mml-miR-6827-5p | 3 | __...... | 8 | 75 |
| MIMAT0028048 | mmu-miR-7071-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027972 | mmu-miR-7034-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027392 | hsa-miR-6746-5p | 1 | ......__ | 6 | 75 |
| MIMAT0024776 | nta-miR482d | 6 | _......_ | 1 | 75 |
| MIMAT0024590 | bta-miR-6120-5p | 8 | __...... | 3 | 75 |
| MIMAT0023354 | hco-miR-5903 | 3 | ......__ | 8 | 75 |
| MIMAT0021642 | gma-miR159f-5p | 8 | __...... | 3 | 75 |
| MIMAT0021368 | mtr-miR5297 | 3 | _......_ | 8 | 75 |
| MIMAT0027093 | bdi-miR395j-5p | 8 | _......_ | 3 | 75 |
| MIMAT0027090 | bdi-miR395f-5p | 6 | __...... | 1 | 75 |
| MIMAT0022986 | mmu-miR-3572-5p | 3 | __...... | 8 | 75 |
| MIMAT0020499 | bfl-miR-4904-5p | 6 | ......__ | 1 | 75 |
| MIMAT0020452 | bfl-miR-4873 | 7 | __...... | 2 | 75 |
| MIMAT0020114 | bfl-miR-4872a | 3 | ......__ | 8 | 75 |
| MIMAT0019766 | hsa-miR-4681 | 3 | _......_ | 8 | 75 |
| MIMAT0019032 | hsa-miR-4497 | 3 | ......__ | 8 | 75 |
| MIMAT0018998 | hsa-miR-4471 | 2 | __...... | 7 | 75 |
| MIMAT0018968 | hsa-miR-4449 | 8 | ......__ | 3 | 75 |
| MIMAT0022736 | hsa-miR-642b-5p | 7 | __...... | 2 | 75 |
| MIMAT0018867 | tca-miR-3884-3p | 6 | ......__ | 1 | 75 |
| MIMAT0018776 | tca-miR-3049-5p | 2 | _......_ | 7 | 75 |
| MIMAT0022968 | ame-miR-3049-5p | 2 | _......_ | 7 | 75 |
| MIMAT0018143 | pab-miR3710 | 2 | __...... | 7 | 75 |
| MIMAT0018042 | vvi-miR3633b-3p | 6 | __...... | 1 | 75 |
| MIMAT0016798 | cin-miR-4183-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016484 | cin-miR-4006g-5p | 1 | __...... | 6 | 75 |
| MIMAT0017667 | aly-miR395h-5p | 6 | __...... | 1 | 75 |
| MIMAT0017555 | aly-miR395f-5p | 6 | __...... | 1 | 75 |
| MIMAT0017549 | aly-miR395c-5p | 6 | __...... | 1 | 75 |
| MIMAT0017547 | aly-miR395b-5p | 6 | __...... | 1 | 75 |
| MIMAT0014919 | mmu-miR-3100-5p | 3 | __...... | 8 | 75 |
| MIMAT0014789 | api-miR-3049 | 2 | _......_ | 7 | 75 |
| MIMAT0014473 | tgu-miR-2966 | 1 | ......__ | 6 | 75 |
| MIMAT0015348 | zma-miR395p-5p | 6 | __...... | 1 | 75 |
| MIMAT0015342 | zma-miR395j-5p | 6 | __...... | 1 | 75 |
| MIMAT0015341 | zma-miR395i-5p | 6 | __...... | 1 | 75 |
| MIMAT0015340 | zma-miR395h-5p | 6 | __...... | 1 | 75 |
| MIMAT0015337 | zma-miR395e-5p | 6 | __...... | 1 | 75 |
| MIMAT0017380 | ssc-miR-450b-3p | 3 | __...... | 8 | 75 |
| MIMAT0013918 | ssc-miR-425-3p | 3 | _......_ | 8 | 75 |
| MIMAT0013841 | bta-miR-2883 | 7 | _......_ | 2 | 75 |
| MIMAT0013221 | eca-miR-450b-3p | 3 | __...... | 8 | 75 |
| MIMAT0013627 | bmo-miR-2757-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012332 | dps-miR-2522b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011960 | bta-miR-2403 | 3 | _......_ | 8 | 75 |
| MIMAT0011761 | zma-miR2118b | 6 | _......_ | 1 | 75 |
| MIMAT0011756 | osa-miR2118q | 6 | _......_ | 1 | 75 |
| MIMAT0011755 | osa-miR2118p | 6 | _......_ | 1 | 75 |
| MIMAT0011753 | osa-miR2118n | 6 | _......_ | 1 | 75 |
| MIMAT0011742 | osa-miR2118c | 6 | _......_ | 1 | 75 |
| MIMAT0011741 | osa-miR2118b | 6 | _......_ | 1 | 75 |
| MIMAT0032053 | dvi-miR-6-2-5p | 2 | __...... | 7 | 75 |
| MIMAT0015283 | dsi-miR-6-5p | 2 | __...... | 7 | 75 |
| MIMAT0008011 | ptr-miR-1292 | 2 | __...... | 7 | 75 |
| MIMAT0020934 | gma-miR159b-5p | 8 | __...... | 3 | 75 |
| MIMAT0007226 | oan-miR-1409-5p | 3 | __...... | 8 | 75 |
| MIMAT0005943 | hsa-miR-1292-5p | 2 | __...... | 7 | 75 |
| MIMAT0022721 | hsa-miR-1247-3p | 3 | ......__ | 8 | 75 |
| MIMAT0017313 | rno-miR-673-3p | 2 | ......__ | 7 | 75 |
| MIMAT0017306 | rno-miR-425-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004239 | ath-miR822-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004153 | mdo-miR-425-3p | 3 | _......_ | 8 | 75 |
| MIMAT0003833 | bta-miR-425-3p | 3 | _......_ | 8 | 75 |
| MIMAT0031952 | dre-miR-30c-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015164 | zma-miR395b-5p | 6 | __...... | 1 | 75 |
| MIMAT0001343 | hsa-miR-425-3p | 3 | _......_ | 8 | 75 |
| MIMAT0001342 | mmu-miR-425-3p | 3 | _......_ | 8 | 75 |
| MIMAT0020789 | dme-miR-6-3-5p | 2 | __...... | 7 | 75 |
| MIMAT0020788 | dme-miR-6-2-5p | 2 | __...... | 7 | 75 |
