| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cctatgc | 7 | ||
| MIMAT0034426 | cfa-miR-8908e | 8 | ....... | 2 | 100 |
| MIMAT0005538 | mcmv-miR-m01-4-5p | 2 | ....... | 8 | 100 |
| MIMAT0036898 | oha-miR-31-3p | 3 | _...... | 8 | 85 |
| MIMAT0036808 | oha-miR-202-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036738 | oha-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0036048 | chi-miR-202-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035983 | chi-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0035681 | bra-miR9562-5p | 2 | _...... | 7 | 85 |
| MIMAT0035632 | dvi-miR-9541-5p | 6 | _...... | 1 | 85 |
| MIMAT0035317 | gsa-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0035106 | efu-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0035064 | efu-miR-31 | 3 | _...... | 8 | 85 |
| MIMAT0034890 | efu-miR-9189h | 8 | ......_ | 3 | 85 |
| MIMAT0032481 | ssa-miR-202-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032391 | ssa-miR-153b-3p | 8 | _...... | 3 | 85 |
| MIMAT0032388 | ssa-miR-153a-3p | 8 | _...... | 3 | 85 |
| MIMAT0031622 | bbe-miR-2061-5p | 8 | _...... | 3 | 85 |
| MIMAT0031593 | bbe-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0030632 | prd-miR-7939c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0029961 | osa-miR7695-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032208 | lva-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0032161 | pmi-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0029456 | ipu-miR-202 | 3 | ......_ | 8 | 85 |
| MIMAT0029428 | ipu-miR-153b | 8 | _...... | 3 | 85 |
| MIMAT0028833 | mdo-miR-7385d-3p | 7 | _...... | 2 | 85 |
| MIMAT0026230 | ccr-miR-153c | 8 | _...... | 3 | 85 |
| MIMAT0026229 | ccr-miR-153b | 8 | _...... | 3 | 85 |
| MIMAT0025391 | bfl-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0024769 | nta-miR6159 | 8 | _...... | 3 | 85 |
| MIMAT0024359 | ppy-miR-202 | 3 | ......_ | 8 | 85 |
| MIMAT0023903 | cgr-miR-31-3p | 3 | _...... | 8 | 85 |
| MIMAT0023370 | hco-miR-5890b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0022780 | sha-miR-202 | 3 | ......_ | 8 | 85 |
| MIMAT0022071 | aca-miR-5449 | 8 | ......_ | 3 | 85 |
| MIMAT0021786 | aca-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0020269 | emu-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0020244 | egr-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0020057 | sko-miR-4830d-3p | 8 | ......_ | 3 | 85 |
| MIMAT0019484 | pma-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0016576 | cin-miR-4043-3p | 8 | _...... | 3 | 85 |
| MIMAT0017871 | rno-miR-3596b | 3 | _...... | 8 | 85 |
| MIMAT0017816 | rno-miR-31b | 1 | _...... | 6 | 85 |
| MIMAT0014897 | mmu-miR-3088-5p | 2 | _...... | 7 | 85 |
| MIMAT0014552 | tgu-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0014367 | cqu-let-7-3p | 1 | _...... | 6 | 85 |
| MIMAT0014119 | bma-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0013948 | ssc-miR-202-5p | 3 | ......_ | 8 | 85 |
| MIMAT0013135 | eca-miR-337-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012936 | eca-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0012822 | rno-miR-202-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026938 | mdo-miR-146a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0012738 | mdo-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0012688 | isc-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0012642 | dpu-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0012346 | dps-miR-2543b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0011257 | sme-miR-2163-3p | 8 | _...... | 3 | 85 |
| MIMAT0009987 | bfl-miR-2061 | 8 | _...... | 3 | 85 |
| MIMAT0009844 | cfa-miR-202 | 3 | ......_ | 8 | 85 |
| MIMAT0009840 | cfa-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0009669 | spu-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0009629 | sko-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0009582 | lgi-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0009528 | cte-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0009259 | bta-miR-202 | 3 | ......_ | 8 | 85 |
| MIMAT0009239 | bta-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0032087 | dvi-miR-31a-3p | 3 | _...... | 8 | 85 |
| MIMAT0008047 | ptr-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0006130 | csa-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0006104 | cin-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0007239 | oan-miR-1421w-3p | 7 | _...... | 2 | 85 |
| MIMAT0007112 | oan-miR-31-3p | 3 | _...... | 8 | 85 |
| MIMAT0007079 | oan-miR-1421p-3p | 7 | _...... | 2 | 85 |
| MIMAT0007005 | oan-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0006974 | oan-miR-1421f-3p | 7 | _...... | 2 | 85 |
| MIMAT0006970 | oan-miR-1421d-3p | 7 | _...... | 2 | 85 |
| MIMAT0026653 | mdo-miR-31-3p | 2 | _...... | 7 | 85 |
| MIMAT0003607 | xtr-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0003012 | tni-miR-153a | 8 | _...... | 3 | 85 |
| MIMAT0003011 | fru-miR-153a | 8 | _...... | 3 | 85 |
| MIMAT0003002 | tni-miR-153b | 8 | _...... | 3 | 85 |
| MIMAT0003001 | fru-miR-153b | 8 | _...... | 3 | 85 |
| MIMAT0002810 | hsa-miR-202-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026577 | mml-miR-31-3p | 2 | _...... | 7 | 85 |
| MIMAT0002274 | ggo-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0002273 | mne-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0002272 | ppy-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0002271 | mml-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0002160 | ssc-miR-153 | 8 | _...... | 3 | 85 |
| MIMAT0003406 | dre-miR-202-5p | 3 | ......_ | 8 | 85 |
| MIMAT0001850 | dre-miR-153c-3p | 8 | _...... | 3 | 85 |
| MIMAT0001849 | dre-miR-153a-3p | 8 | _...... | 3 | 85 |
| MIMAT0001848 | dre-miR-153b-3p | 8 | _...... | 3 | 85 |
| MIMAT0026549 | gga-miR-31-3p | 3 | _...... | 8 | 85 |
| MIMAT0001119 | gga-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0000855 | rno-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0017102 | rno-miR-31a-3p | 3 | _...... | 8 | 85 |
| MIMAT0004634 | mmu-miR-31-3p | 3 | _...... | 8 | 85 |
| MIMAT0000439 | hsa-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0020834 | dme-miR-31a-3p | 3 | _...... | 8 | 85 |
| MIMAT0020825 | dme-miR-31b-3p | 3 | _...... | 8 | 85 |
| MIMAT0004546 | mmu-miR-202-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000163 | mmu-miR-153-3p | 8 | _...... | 3 | 85 |
| MIMAT0004504 | hsa-miR-31-3p | 3 | _...... | 8 | 85 |
| MIMAT0015091 | cel-let-7-3p | 1 | _...... | 6 | 85 |
