| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cctggacc | 8 | ||
| MIMAT0004815 | ebv-miR-BART7-5p | 1 | ........ | 8 | 100 |
| MIMAT0035735 | rno-miR-1956-5p | 8 | ......._ | 2 | 87 |
| MIMAT0034672 | eca-miR-9122 | 2 | ......._ | 8 | 87 |
| MIMAT0024775 | nta-miR6161b | 2 | _....... | 8 | 87 |
| MIMAT0024774 | nta-miR6161a | 2 | _....... | 8 | 87 |
| MIMAT0023830 | cgr-miR-1956 | 8 | ......._ | 2 | 87 |
| MIMAT0020634 | mmu-miR-5124a | 7 | _....... | 1 | 87 |
| MIMAT0019696 | hsa-miR-4638-3p | 1 | ......._ | 7 | 87 |
| MIMAT0018119 | hsa-miR-3690 | 2 | ......._ | 8 | 87 |
| MIMAT0009428 | mmu-miR-1956 | 8 | ......._ | 2 | 87 |
| MIMAT0005498 | dme-miR-982-5p | 2 | ......._ | 8 | 87 |
| MIMAT0002613 | mne-miR-198 | 7 | _....... | 1 | 87 |
| MIMAT0002612 | lla-miR-198 | 7 | _....... | 1 | 87 |
| MIMAT0002611 | sla-miR-198 | 7 | _....... | 1 | 87 |
| MIMAT0002610 | mml-miR-198 | 7 | _....... | 1 | 87 |
| MIMAT0002609 | ptr-miR-198 | 7 | _....... | 1 | 87 |
| MIMAT0002608 | ppy-miR-198 | 7 | _....... | 1 | 87 |
| MIMAT0002607 | ppa-miR-198 | 7 | _....... | 1 | 87 |
| MIMAT0002606 | age-miR-198 | 7 | _....... | 1 | 87 |
| MIMAT0002605 | ggo-miR-198 | 7 | _....... | 1 | 87 |
| MIMAT0000228 | hsa-miR-198 | 7 | _....... | 1 | 87 |
| MIMAT0034761 | eca-miR-9180 | 1 | .t...... | 8 | 87 |
| MIMAT0034729 | eca-miR-9153 | 8 | ......g. | 1 | 87 |
| MIMAT0037082 | ssc-miR-378b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0037065 | ssc-miR-9846-3p | 3 | ......__ | 8 | 75 |
| MIMAT0037040 | ssc-miR-9822-3p | 2 | ......__ | 7 | 75 |
| MIMAT0037039 | ssc-miR-9821-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036972 | bta-miR-378d | 1 | _......_ | 6 | 75 |
| MIMAT0036952 | oha-miR-875-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036839 | oha-miR-2188-5p | 8 | __...... | 3 | 75 |
| MIMAT0036727 | oha-miR-145-5p | 6 | _......_ | 1 | 75 |
| MIMAT0036533 | tch-miR-378a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0036194 | chi-miR-378-3p | 2 | _......_ | 7 | 75 |
| MIMAT0035967 | chi-miR-145-5p | 6 | _......_ | 1 | 75 |
| MIMAT0035416 | nve-miR-9455 | 6 | _......_ | 1 | 75 |
| MIMAT0035366 | bol-miR9411 | 3 | _......_ | 8 | 75 |
| MIMAT0035122 | efu-miR-145 | 6 | _......_ | 1 | 75 |
| MIMAT0034917 | efu-miR-9279a | 2 | ......__ | 7 | 75 |
| MIMAT0034813 | efu-miR-378 | 3 | _......_ | 8 | 75 |
| MIMAT0034722 | eca-miR-9146 | 2 | ......__ | 7 | 75 |
| MIMAT0034586 | eca-miR-9043 | 2 | __...... | 7 | 75 |
| MIMAT0034463 | eca-miR-8934 | 3 | ......__ | 8 | 75 |
| MIMAT0034439 | eca-miR-8911 | 1 | ......__ | 6 | 75 |
| MIMAT0034325 | cfa-miR-8832 | 6 | ......__ | 1 | 75 |
| MIMAT0034317 | cfa-miR-8826 | 2 | _......_ | 7 | 75 |
| MIMAT0032654 | ssa-miR-462a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032522 | ssa-miR-2188-5p | 8 | __...... | 3 | 75 |
| MIMAT0032369 | ssa-miR-145-5p | 6 | _......_ | 1 | 75 |
| MIMAT0030985 | hsa-miR-8058 | 1 | _......_ | 6 | 75 |
| MIMAT0029797 | mmu-miR-7647-3p | 8 | _......_ | 3 | 75 |
| MIMAT0029471 | ipu-miR-2188 | 8 | __...... | 3 | 75 |
| MIMAT0029422 | ipu-miR-145 | 6 | _......_ | 1 | 75 |
| MIMAT0029200 | mes-miR166i | 2 | __...... | 7 | 75 |
| MIMAT0028563 | mdo-miR-7290-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028511 | mdo-miR-7270-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028456 | mdo-miR-7245-5p | 7 | __...... | 2 | 75 |
| MIMAT0028441 | mmu-miR-7236-3p | 2 | __...... | 7 | 75 |
| MIMAT0028413 | mmu-miR-7222-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028181 | dev-miR-D9-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028123 | hsa-miR-7113-5p | 6 | ......__ | 1 | 75 |
| MIMAT0027970 | mmu-miR-7033-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027962 | mmu-miR-7029-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027800 | mmu-miR-6950-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027624 | hsa-miR-6861-3p | 1 | __...... | 6 | 75 |
| MIMAT0025720 | gga-miR-6624-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025551 | bta-miR-378c | 2 | _......_ | 7 | 75 |
| MIMAT0025138 | mmu-miR-378c | 2 | _......_ | 7 | 75 |
| MIMAT0025125 | mmu-miR-6379 | 3 | ......__ | 8 | 75 |
| MIMAT0025105 | mmu-miR-145b | 6 | _......_ | 1 | 75 |
| MIMAT0025050 | rno-miR-6315 | 2 | _......_ | 7 | 75 |
| MIMAT0027314 | ppe-miR6284 | 3 | __...... | 8 | 75 |
| MIMAT0024792 | hbr-miR6172 | 1 | __...... | 6 | 75 |
| MIMAT0024560 | cca-miR6115 | 2 | _......_ | 7 | 75 |
| MIMAT0024409 | ppy-miR-378e | 2 | _......_ | 7 | 75 |
| MIMAT0024394 | ppy-miR-151b | 6 | ......__ | 1 | 75 |
| MIMAT0024364 | ppy-miR-378b | 2 | _......_ | 7 | 75 |
| MIMAT0024360 | ppy-miR-378d | 2 | _......_ | 7 | 75 |
| MIMAT0024313 | mml-miR-378d | 2 | _......_ | 7 | 75 |
| MIMAT0024303 | ggo-miR-378e | 2 | _......_ | 7 | 75 |
| MIMAT0024242 | ggo-miR-378b | 2 | _......_ | 7 | 75 |
| MIMAT0024103 | ggo-miR-378a | 2 | _......_ | 7 | 75 |
| MIMAT0024067 | ptr-miR-378e | 2 | _......_ | 7 | 75 |
| MIMAT0024044 | ptr-miR-378b | 2 | _......_ | 7 | 75 |
| MIMAT0023944 | cgr-miR-378-3p | 2 | _......_ | 7 | 75 |
| MIMAT0023266 | osa-miR5798 | 1 | _......_ | 6 | 75 |
| MIMAT0023207 | gma-miR319n | 3 | __...... | 8 | 75 |
| MIMAT0021882 | aca-miR-2188-5p | 8 | __...... | 3 | 75 |
| MIMAT0021773 | aca-miR-145-5p | 6 | _......_ | 1 | 75 |
| MIMAT0021483 | asu-miR-87b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0021418 | asu-let-7-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020210 | dme-miR-4978-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020206 | dme-miR-4976-5p | 6 | ......__ | 1 | 75 |
| MIMAT0019978 | hsa-miR-4800-5p | 3 | __...... | 8 | 75 |
| MIMAT0019932 | hsa-miR-4776-5p | 2 | __...... | 7 | 75 |
| MIMAT0019755 | hsa-miR-4673 | 6 | ......__ | 1 | 75 |
| MIMAT0019662 | pma-miR-4628 | 7 | __...... | 2 | 75 |
| MIMAT0019595 | pma-miR-4563 | 3 | _......_ | 8 | 75 |
| MIMAT0019476 | pma-miR-145-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019348 | mmu-miR-378b | 1 | _......_ | 6 | 75 |
| MIMAT0019075 | hsa-miR-4535 | 2 | __...... | 7 | 75 |
| MIMAT0019074 | hsa-miR-378i | 2 | _......_ | 7 | 75 |
| MIMAT0019059 | hsa-miR-1269b | 1 | _......_ | 6 | 75 |
| MIMAT0018984 | hsa-miR-378h | 2 | _......_ | 7 | 75 |
| MIMAT0018932 | hsa-miR-378f | 2 | _......_ | 7 | 75 |
| MIMAT0018927 | hsa-miR-378e | 2 | _......_ | 7 | 75 |
| MIMAT0018710 | tca-miR-3836b-5p | 7 | __...... | 2 | 75 |
| MIMAT0018074 | hsa-miR-3654 | 3 | _......_ | 8 | 75 |
| MIMAT0017966 | ssc-miR-4334-5p | 2 | ......__ | 7 | 75 |
| MIMAT0016884 | hsa-miR-4254 | 2 | ......__ | 7 | 75 |
| MIMAT0016861 | hsa-miR-4308 | 3 | ......__ | 8 | 75 |
| MIMAT0016847 | hsa-miR-378c | 2 | _......_ | 7 | 75 |
| MIMAT0017831 | rno-miR-3561-3p | 8 | ......__ | 3 | 75 |
| MIMAT0016372 | gga-miR-2188-5p | 8 | __...... | 3 | 75 |
| MIMAT0016193 | ppy-miR-1269 | 1 | _......_ | 6 | 75 |
| MIMAT0016114 | ppy-miR-875-3p | 1 | ......__ | 6 | 75 |
| MIMAT0016061 | ppy-miR-619 | 3 | ......__ | 8 | 75 |
| MIMAT0015881 | ppy-miR-422a | 2 | _......_ | 7 | 75 |
| MIMAT0015868 | ppy-miR-378a | 2 | _......_ | 7 | 75 |
| MIMAT0014999 | hsa-miR-378b | 2 | _......_ | 7 | 75 |
| MIMAT0014978 | hsa-miR-3116 | 3 | ......__ | 8 | 75 |
| MIMAT0014480 | tgu-miR-2188-5p | 8 | __...... | 3 | 75 |
| MIMAT0014458 | tgu-miR-2959 | 3 | ......__ | 8 | 75 |
| MIMAT0013868 | ssc-miR-378 | 2 | _......_ | 7 | 75 |
| MIMAT0013068 | eca-miR-378 | 2 | _......_ | 7 | 75 |
| MIMAT0013064 | eca-miR-145 | 6 | _......_ | 1 | 75 |
| MIMAT0012424 | dsi-miR-978a | 7 | _......_ | 2 | 75 |
| MIMAT0012193 | xtr-miR-2188 | 8 | __...... | 3 | 75 |
| MIMAT0011309 | dre-miR-2188-5p | 8 | __...... | 3 | 75 |
| MIMAT0009863 | cfa-miR-145 | 6 | _......_ | 1 | 75 |
| MIMAT0009305 | bta-miR-378 | 2 | _......_ | 7 | 75 |
| MIMAT0032097 | dvi-miR-284-5p | 1 | ......__ | 6 | 75 |
| MIMAT0008281 | ptr-miR-619 | 3 | ......__ | 8 | 75 |
| MIMAT0008141 | ptr-miR-422a | 2 | _......_ | 7 | 75 |
| MIMAT0008130 | ptr-miR-378a | 2 | _......_ | 7 | 75 |
| MIMAT0007979 | ptr-miR-1254 | 3 | ......__ | 8 | 75 |
| MIMAT0007902 | bmo-miR-184-3p | 2 | _......_ | 7 | 75 |
| MIMAT0006683 | cfa-miR-378 | 2 | _......_ | 7 | 75 |
| MIMAT0006518 | mml-miR-875-3p | 1 | ......__ | 6 | 75 |
| MIMAT0006320 | mml-miR-422a | 2 | _......_ | 7 | 75 |
| MIMAT0006307 | mml-miR-378a | 2 | _......_ | 7 | 75 |
| MIMAT0007493 | gga-miR-1625-5p | 1 | __...... | 6 | 75 |
| MIMAT0007141 | oan-miR-145-5p | 6 | _......_ | 1 | 75 |
| MIMAT0007024 | oan-miR-1362-3p | 8 | _......_ | 3 | 75 |
| MIMAT0006895 | oan-miR-1422k-5p | 8 | _......_ | 3 | 75 |
| MIMAT0005923 | hsa-miR-1269a | 1 | _......_ | 6 | 75 |
| MIMAT0005905 | hsa-miR-1254 | 3 | ......__ | 8 | 75 |
| MIMAT0005423 | cre-miR1166.2 | 7 | __...... | 2 | 75 |
| MIMAT0005422 | cre-miR1166.1 | 1 | __...... | 6 | 75 |
| MIMAT0005405 | cre-miR1156.1 | 1 | __...... | 6 | 75 |
| MIMAT0005494 | dme-miR-978-3p | 7 | _......_ | 2 | 75 |
| MIMAT0004923 | hsa-miR-875-3p | 1 | ......__ | 6 | 75 |
| MIMAT0004116 | mdo-miR-145-5p | 6 | _......_ | 1 | 75 |
| MIMAT0003688 | xtr-miR-145 | 6 | _......_ | 1 | 75 |
| MIMAT0003542 | bta-miR-145 | 6 | _......_ | 1 | 75 |
| MIMAT0018926 | hsa-miR-378d | 2 | _......_ | 7 | 75 |
| MIMAT0004816 | ebv-miR-BART9-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003379 | rno-miR-378a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0003288 | hsa-miR-619-3p | 3 | ......__ | 8 | 75 |
| MIMAT0002270 | mne-miR-145 | 6 | _......_ | 1 | 75 |
| MIMAT0002269 | ppy-miR-145 | 6 | _......_ | 1 | 75 |
| MIMAT0002268 | ggo-miR-145 | 6 | _......_ | 1 | 75 |
| MIMAT0002267 | ptr-miR-145 | 6 | _......_ | 1 | 75 |
| MIMAT0002266 | mml-miR-145-5p | 6 | _......_ | 1 | 75 |
| MIMAT0002123 | ssc-miR-145-5p | 6 | _......_ | 1 | 75 |
| MIMAT0001842 | dre-miR-145-5p | 6 | _......_ | 1 | 75 |
| MIMAT0004754 | hcmv-miR-UL36-3p | 8 | ......__ | 3 | 75 |
| MIMAT0001339 | hsa-miR-422a | 2 | _......_ | 7 | 75 |
| MIMAT0000851 | rno-miR-145-5p | 6 | _......_ | 1 | 75 |
| MIMAT0003151 | mmu-miR-378a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0000732 | hsa-miR-378a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0000437 | hsa-miR-145-5p | 6 | _......_ | 1 | 75 |
| MIMAT0020811 | dme-miR-284-5p | 1 | ......__ | 6 | 75 |
| MIMAT0000157 | mmu-miR-145a-5p | 6 | _......_ | 1 | 75 |
