| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ccttagc | 7 | ||
| MIMAT0028596 | mdo-miR-7302-5p | 2 | ....... | 8 | 100 |
| MIMAT0025110 | mmu-miR-6366 | 8 | ....... | 2 | 100 |
| MIMAT0022440 | ath-miR5663-5p | 8 | ....... | 2 | 100 |
| MIMAT0019058 | hsa-miR-4521 | 7 | ....... | 1 | 100 |
| MIMAT0004461 | mdv2-miR-M20-5p | 2 | ....... | 8 | 100 |
| MIMAT0034604 | eca-miR-9059 | 2 | _...... | 7 | 85 |
| MIMAT0033880 | atr-miR8593 | 2 | _...... | 7 | 85 |
| MIMAT0033580 | sma-miR-8438-5p | 8 | ......_ | 3 | 85 |
| MIMAT0031690 | bbe-miR-4866-3p | 2 | _...... | 7 | 85 |
| MIMAT0031657 | bbe-miR-252b-5p | 7 | _...... | 2 | 85 |
| MIMAT0030473 | prd-miR-7867-3p | 3 | _...... | 8 | 85 |
| MIMAT0030139 | bdi-miR7711-5p.1 | 3 | _...... | 8 | 85 |
| MIMAT0029106 | gga-miR-7476-5p | 2 | _...... | 7 | 85 |
| MIMAT0028813 | mdo-miR-7378-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028512 | mdo-miR-7271-5p | 2 | _...... | 7 | 85 |
| MIMAT0025585 | mmu-miR-6540-5p | 6 | ......_ | 1 | 85 |
| MIMAT0024795 | hbr-miR6174 | 8 | _...... | 3 | 85 |
| MIMAT0022399 | ath-miR5630b | 6 | _...... | 1 | 85 |
| MIMAT0022389 | ath-miR5630a | 6 | _...... | 1 | 85 |
| MIMAT0022372 | mmu-miR-5622-3p | 1 | _...... | 6 | 85 |
| MIMAT0019697 | hsa-miR-4639-5p | 8 | _...... | 3 | 85 |
| MIMAT0022735 | hsa-miR-374c-3p | 3 | _...... | 8 | 85 |
| MIMAT0018258 | gma-miR4362 | 1 | ......_ | 6 | 85 |
| MIMAT0016367 | lja-miR2111-3p | 3 | ......_ | 8 | 85 |
| MIMAT0014954 | mmu-miR-374c-3p | 2 | _...... | 7 | 85 |
| MIMAT0013301 | mtr-miR2598 | 6 | ......_ | 1 | 85 |
| MIMAT0026926 | mtr-miR2111d-3p | 3 | ......_ | 8 | 85 |
| MIMAT0011786 | dme-miR-2280-5p | 2 | _...... | 7 | 85 |
| MIMAT0007529 | gga-miR-1651-5p | 6 | _...... | 1 | 85 |
| MIMAT0005513 | dme-miR-994-5p | 6 | ......_ | 1 | 85 |
| MIMAT0004956 | hsa-miR-374b-3p | 1 | _...... | 6 | 85 |
| MIMAT0003907 | ppt-miR1218 | 1 | ......_ | 6 | 85 |
| MIMAT0017223 | rno-miR-374-3p | 1 | _...... | 6 | 85 |
