| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgagcgtg | 8 | ||
| MIMAT0028188 | dev-miR-D15-3p | 1 | ........ | 8 | 100 |
| MIMAT0034912 | efu-miR-9275 | 2 | _....... | 8 | 87 |
| MIMAT0024162 | ggo-miR-574 | 7 | _....... | 1 | 87 |
| MIMAT0022314 | cel-miR-5595-3p | 2 | _....... | 8 | 87 |
| MIMAT0018577 | ame-miR-3793 | 2 | _....... | 8 | 87 |
| MIMAT0013951 | ssc-miR-574 | 7 | _....... | 1 | 87 |
| MIMAT0006673 | cfa-miR-574 | 7 | _....... | 1 | 87 |
| MIMAT0004894 | mmu-miR-574-3p | 7 | _....... | 1 | 87 |
| MIMAT0003239 | hsa-miR-574-3p | 7 | _....... | 1 | 87 |
| MIMAT0029815 | mmu-miR-7654-3p | 1 | ......g. | 8 | 87 |
| MIMAT0036981 | tae-miR531 | 6 | ......__ | 1 | 75 |
| MIMAT0035361 | xtr-miR-9407 | 8 | ......__ | 3 | 75 |
| MIMAT0034743 | eca-miR-9165 | 8 | ......__ | 3 | 75 |
| MIMAT0033106 | ppc-miR-8296-3p | 7 | _......_ | 2 | 75 |
| MIMAT0032984 | ppc-miR-8258-5p | 6 | _......_ | 1 | 75 |
| MIMAT0031416 | mmu-miR-8110 | 2 | __...... | 7 | 75 |
| MIMAT0031405 | mmu-miR-8101 | 3 | ......__ | 8 | 75 |
| MIMAT0030702 | prd-miR-7927e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029966 | mtr-miR2653d | 7 | __...... | 2 | 75 |
| MIMAT0029097 | gga-miR-7471-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028985 | oan-miR-7418-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028808 | mdo-miR-7376-5p | 2 | __...... | 7 | 75 |
| MIMAT0027606 | hsa-miR-6853-5p | 1 | __...... | 6 | 75 |
| MIMAT0025746 | gga-miR-6648-5p | 3 | _......_ | 8 | 75 |
| MIMAT0025260 | ptc-miR6424 | 6 | ......__ | 1 | 75 |
| MIMAT0025182 | ptc-miR6458 | 6 | _......_ | 1 | 75 |
| MIMAT0021494 | asu-miR-100d-3p | 6 | __...... | 1 | 75 |
| MIMAT0018254 | gma-miR4387c | 1 | __...... | 6 | 75 |
| MIMAT0014940 | mmu-miR-3104-3p | 6 | _......_ | 1 | 75 |
| MIMAT0013438 | mtr-miR2653c | 7 | __...... | 2 | 75 |
| MIMAT0013437 | mtr-miR2653b | 7 | __...... | 2 | 75 |
| MIMAT0013436 | mtr-miR2653a | 7 | __...... | 2 | 75 |
| MIMAT0007880 | mmu-miR-1901 | 7 | ......__ | 2 | 75 |
| MIMAT0007394 | gma-miR1532 | 8 | __...... | 3 | 75 |
| MIMAT0012102 | sme-miR-745-5p | 7 | _......_ | 2 | 75 |
| MIMAT0015183 | zma-miR319d-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015182 | zma-miR319b-5p | 2 | _......_ | 7 | 75 |
