| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cgatgca | 7 | ||
| MIMAT0007250 | oan-miR-1421aa-3p | 7 | ....... | 1 | 100 |
| MIMAT0007246 | oan-miR-1421z-3p | 7 | ....... | 1 | 100 |
| MIMAT0007243 | oan-miR-1421x-3p | 7 | ....... | 1 | 100 |
| MIMAT0003438 | rlcv-miR-rL1-9 | 2 | ....... | 8 | 100 |
| MIMAT0036991 | tae-miR9778 | 6 | _...... | 1 | 85 |
| MIMAT0036840 | oha-miR-2188-3p | 1 | _...... | 6 | 85 |
| MIMAT0036547 | tch-miR-9771h | 2 | _...... | 7 | 85 |
| MIMAT0034748 | eca-miR-9170 | 8 | _...... | 3 | 85 |
| MIMAT0034075 | gra-miR8694b | 3 | _...... | 8 | 85 |
| MIMAT0034074 | gra-miR8694a | 3 | _...... | 8 | 85 |
| MIMAT0033360 | str-miR-8370-5p | 2 | _...... | 7 | 85 |
| MIMAT0030517 | prd-miR-242-3p | 1 | _...... | 6 | 85 |
| MIMAT0030310 | bdi-miR7778-5p | 8 | ......_ | 3 | 85 |
| MIMAT0029839 | mmu-miR-7666-3p | 1 | _...... | 6 | 85 |
| MIMAT0029002 | oan-miR-7426-5p | 8 | _...... | 3 | 85 |
| MIMAT0026348 | bma-miR-5850 | 8 | _...... | 3 | 85 |
| MIMAT0028122 | hsa-miR-7112-3p | 6 | _...... | 1 | 85 |
| MIMAT0025642 | gga-miR-3594-3p | 8 | _...... | 3 | 85 |
| MIMAT0024836 | hvu-miR6208 | 7 | _...... | 2 | 85 |
| MIMAT0022225 | mtr-miR5554c-5p | 8 | _...... | 3 | 85 |
| MIMAT0022207 | mtr-miR5554b-5p | 8 | _...... | 3 | 85 |
| MIMAT0022199 | mtr-miR5554a-5p | 8 | _...... | 3 | 85 |
| MIMAT0022151 | osa-miR5517 | 6 | _...... | 1 | 85 |
| MIMAT0027081 | bdi-miR5173-3p | 6 | _...... | 1 | 85 |
| MIMAT0019816 | hsa-miR-4711-5p | 6 | _...... | 1 | 85 |
| MIMAT0015431 | bmo-miR-3249 | 8 | _...... | 3 | 85 |
| MIMAT0014526 | tgu-miR-1559 | 3 | ......_ | 8 | 85 |
| MIMAT0013827 | osa-miR2877 | 7 | _...... | 2 | 85 |
| MIMAT0009417 | mmu-miR-1950 | 8 | _...... | 3 | 85 |
| MIMAT0032080 | dvi-miR-3-5p | 2 | _...... | 7 | 85 |
| MIMAT0026776 | gga-miR-1618-5p | 6 | _...... | 1 | 85 |
| MIMAT0007416 | gga-miR-1559-5p | 3 | ......_ | 8 | 85 |
| MIMAT0006148 | mdo-miR-1548-3p | 6 | _...... | 1 | 85 |
| MIMAT0009181 | oan-miR-1421l-2-3p | 6 | _...... | 1 | 85 |
| MIMAT0009179 | oan-miR-1421k-3p | 6 | _...... | 1 | 85 |
| MIMAT0007308 | oan-miR-1421aj-3p | 6 | _...... | 1 | 85 |
| MIMAT0007306 | oan-miR-1421ai-3p | 6 | _...... | 1 | 85 |
| MIMAT0007302 | oan-miR-1421ac-2-3p | 6 | _...... | 1 | 85 |
| MIMAT0007298 | oan-miR-1421ag-3p | 8 | _...... | 3 | 85 |
| MIMAT0009173 | oan-miR-1421y-3-3p | 6 | _...... | 1 | 85 |
| MIMAT0009172 | oan-miR-1421y-2-3p | 6 | _...... | 1 | 85 |
| MIMAT0007265 | oan-miR-1421af-3p | 6 | _...... | 1 | 85 |
| MIMAT0007260 | oan-miR-1421ad-3p | 6 | _...... | 1 | 85 |
| MIMAT0007258 | oan-miR-1421ac-3p | 6 | _...... | 1 | 85 |
| MIMAT0009168 | oan-miR-1421n-2-3p | 6 | _...... | 1 | 85 |
| MIMAT0007087 | oan-miR-1421t-3p | 8 | _...... | 3 | 85 |
| MIMAT0007085 | oan-miR-1421s-3p | 6 | _...... | 1 | 85 |
| MIMAT0007081 | oan-miR-1421q-3p | 6 | _...... | 1 | 85 |
| MIMAT0007075 | oan-miR-1421n-1-3p | 8 | _...... | 3 | 85 |
| MIMAT0007067 | oan-miR-1421k-1-3p | 6 | _...... | 1 | 85 |
| MIMAT0006968 | oan-miR-1421c-3p | 8 | _...... | 3 | 85 |
| MIMAT0006964 | oan-miR-1421a-3p | 7 | _...... | 2 | 85 |
| MIMAT0006861 | oan-miR-1339-5p | 2 | _...... | 7 | 85 |
| MIMAT0005132 | ppt-miR1030j | 8 | _...... | 3 | 85 |
| MIMAT0005131 | ppt-miR1030i | 8 | _...... | 3 | 85 |
| MIMAT0005130 | ppt-miR1030h | 8 | _...... | 3 | 85 |
| MIMAT0005129 | ppt-miR1030g | 8 | _...... | 3 | 85 |
| MIMAT0005128 | ppt-miR1030f | 8 | _...... | 3 | 85 |
| MIMAT0005127 | ppt-miR1030e | 8 | _...... | 3 | 85 |
| MIMAT0005126 | ppt-miR1030d | 8 | _...... | 3 | 85 |
| MIMAT0005125 | ppt-miR1030c | 8 | _...... | 3 | 85 |
| MIMAT0005124 | ppt-miR1030b | 8 | _...... | 3 | 85 |
| MIMAT0005123 | ppt-miR1030a | 8 | _...... | 3 | 85 |
| MIMAT0003981 | sme-miR-36a-5p | 2 | _...... | 7 | 85 |
| MIMAT0020784 | dme-miR-3-5p | 2 | _...... | 7 | 85 |
