| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | cggaaca | 7 | ||
| MIMAT0037075 | ssc-miR-9856-3p | 7 | ....... | 1 | 100 |
| MIMAT0016528 | cin-miR-4018a-5p | 1 | ....... | 7 | 100 |
| MIMAT0012868 | hvt-miR-H15-5p | 2 | ....... | 8 | 100 |
| MIMAT0034688 | eca-miR-9137 | 8 | _...... | 3 | 85 |
| MIMAT0034591 | eca-miR-9047 | 6 | _...... | 1 | 85 |
| MIMAT0033945 | atr-miR398 | 8 | _...... | 3 | 85 |
| MIMAT0033659 | sma-miR-8470-5p | 3 | ......_ | 8 | 85 |
| MIMAT0033559 | sma-miR-8427-3p | 1 | _...... | 6 | 85 |
| MIMAT0033544 | sma-miR-8420-5p | 3 | _...... | 8 | 85 |
| MIMAT0031696 | bbe-miR-4873-5p | 6 | _...... | 1 | 85 |
| MIMAT0030309 | bdi-miR7777-3p.1 | 7 | _...... | 2 | 85 |
| MIMAT0028825 | mdo-miR-7384-3p | 3 | _...... | 8 | 85 |
| MIMAT0026400 | sbi-miR5568c-5p | 8 | _...... | 3 | 85 |
| MIMAT0025787 | gga-miR-6682-3p | 2 | _...... | 7 | 85 |
| MIMAT0024823 | hvu-miR6197 | 8 | _...... | 3 | 85 |
| MIMAT0024801 | hvu-miR6178 | 3 | ......_ | 8 | 85 |
| MIMAT0024590 | bta-miR-6120-5p | 7 | _...... | 2 | 85 |
| MIMAT0021318 | mtr-miR5279 | 1 | ......_ | 6 | 85 |
| MIMAT0021231 | mtr-miR2592bk | 2 | _...... | 7 | 85 |
| MIMAT0021230 | mtr-miR2592bj | 2 | _...... | 7 | 85 |
| MIMAT0021229 | mtr-miR2592bi | 2 | _...... | 7 | 85 |
| MIMAT0020502 | bfl-miR-4906 | 6 | _...... | 1 | 85 |
| MIMAT0020452 | bfl-miR-4873 | 6 | _...... | 1 | 85 |
| MIMAT0019570 | pma-miR-4542-5p | 8 | _...... | 3 | 85 |
| MIMAT0018893 | tca-miR-3895-3p | 1 | ......_ | 6 | 85 |
| MIMAT0018625 | tca-miR-3804a-3p | 7 | _...... | 2 | 85 |
| MIMAT0018567 | ame-miR-3788 | 6 | ......_ | 1 | 85 |
| MIMAT0016888 | hsa-miR-4326 | 6 | _...... | 1 | 85 |
| MIMAT0016530 | cin-miR-4018b-5p | 2 | _...... | 7 | 85 |
| MIMAT0016484 | cin-miR-4006g-5p | 2 | _...... | 7 | 85 |
| MIMAT0016482 | cin-miR-4006f-5p | 2 | _...... | 7 | 85 |
| MIMAT0016480 | cin-miR-4006e-5p | 2 | _...... | 7 | 85 |
| MIMAT0016478 | cin-miR-4006a-5p | 2 | _...... | 7 | 85 |
| MIMAT0016476 | cin-miR-4006d-5p | 2 | _...... | 7 | 85 |
| MIMAT0016474 | cin-miR-4006c-5p | 2 | _...... | 7 | 85 |
| MIMAT0016472 | cin-miR-4006b-5p | 2 | _...... | 7 | 85 |
| MIMAT0016450 | cin-miR-4001c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015425 | bmo-miR-3243 | 2 | _...... | 7 | 85 |
| MIMAT0015395 | bmo-miR-3215 | 8 | _...... | 3 | 85 |
| MIMAT0005961 | osa-miR1427 | 3 | ......_ | 8 | 85 |
| MIMAT0006951 | oan-miR-1355-5p | 6 | _...... | 1 | 85 |
| MIMAT0005000 | pta-miR398 | 8 | _...... | 3 | 85 |
| MIMAT0026490 | gga-miR-33-3p | 8 | _...... | 3 | 85 |
