| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctaaacac | 8 | ||
| MIMAT0028189 | dev-miR-D16-3p | 1 | ........ | 8 | 100 |
| MIMAT0015794 | ppy-miR-199b-5p | 8 | ........ | 1 | 100 |
| MIMAT0036392 | gma-miR9758 | 7 | ......._ | 1 | 87 |
| MIMAT0035292 | gsa-miR-124b-5p | 7 | _....... | 1 | 87 |
| MIMAT0028987 | oan-miR-7419-3p | 7 | ......._ | 1 | 87 |
| MIMAT0028853 | mdo-miR-7386e-3p | 2 | _....... | 8 | 87 |
| MIMAT0028271 | mml-miR-7168-3p | 8 | _....... | 2 | 87 |
| MIMAT0032121 | gma-miR5035-3p | 7 | ......._ | 1 | 87 |
| MIMAT0017626 | aly-miR840-3p | 8 | ......._ | 2 | 87 |
| MIMAT0012501 | dsi-miR-975 | 1 | _....... | 7 | 87 |
| MIMAT0009211 | osa-miR1850.3 | 8 | ......._ | 2 | 87 |
| MIMAT0015257 | cin-miR-124-2-5p | 8 | _....... | 2 | 87 |
| MIMAT0005491 | dme-miR-975-5p | 1 | _....... | 7 | 87 |
| MIMAT0032021 | ath-miR840-3p | 8 | ......._ | 2 | 87 |
| MIMAT0007836 | osa-miR1879 | 8 | .c...... | 1 | 87 |
| MIMAT0020850 | dme-miR-956-5p | 8 | .c...... | 1 | 87 |
| MIMAT0037151 | ata-miR395b-3p | 8 | __...... | 3 | 75 |
| MIMAT0037050 | ssc-miR-9832-3p | 6 | ......__ | 1 | 75 |
| MIMAT0036968 | gra-miR827b | 8 | _......_ | 3 | 75 |
| MIMAT0036895 | oha-miR-30d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036892 | oha-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036890 | oha-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036888 | oha-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036886 | oha-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036585 | tch-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036562 | tch-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036503 | tch-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036130 | chi-miR-30f-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036128 | chi-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036125 | chi-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036123 | chi-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0036121 | chi-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0035693 | bra-miR9567-5p | 1 | _......_ | 6 | 75 |
| MIMAT0035633 | dvi-miR-9541-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035192 | efu-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0034264 | gra-miR8639e | 1 | _......_ | 6 | 75 |
| MIMAT0034263 | gra-miR8639d | 1 | _......_ | 6 | 75 |
| MIMAT0033995 | gra-miR8639i | 1 | _......_ | 6 | 75 |
| MIMAT0033994 | gra-miR8639h | 1 | _......_ | 6 | 75 |
| MIMAT0033993 | gra-miR8639g | 1 | _......_ | 6 | 75 |
| MIMAT0033992 | gra-miR8639f | 1 | _......_ | 6 | 75 |
| MIMAT0033991 | gra-miR8639c | 1 | _......_ | 6 | 75 |
| MIMAT0033990 | gra-miR8639b | 1 | _......_ | 6 | 75 |
| MIMAT0033989 | gra-miR8639a | 1 | _......_ | 6 | 75 |
| MIMAT0033525 | sma-miR-8410-3p | 7 | __...... | 2 | 75 |
| MIMAT0033115 | ppc-miR-8299-5p | 8 | __...... | 3 | 75 |
| MIMAT0032611 | ssa-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032608 | ssa-miR-30d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032606 | ssa-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032604 | ssa-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032600 | ssa-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032362 | ssa-miR-142a-3p | 7 | __...... | 2 | 75 |
| MIMAT0031842 | cpa-miR8145 | 2 | _......_ | 7 | 75 |
| MIMAT0031530 | ppe-miR7122b-3p | 8 | __...... | 3 | 75 |
| MIMAT0030583 | prd-miR-7896-3p | 3 | ......__ | 8 | 75 |
| MIMAT0030059 | oar-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0030058 | oar-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0030057 | oar-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0030055 | oar-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029657 | cbn-miR-7618 | 3 | __...... | 8 | 75 |
| MIMAT0029498 | ipu-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0029497 | ipu-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0029354 | lja-miR7531 | 7 | __...... | 2 | 75 |
| MIMAT0029026 | oan-miR-7436-5p | 8 | __...... | 3 | 75 |
| MIMAT0028847 | mdo-miR-7386j-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028648 | mdo-miR-7324-5p | 1 | __...... | 6 | 75 |
| MIMAT0028622 | mdo-miR-30d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028550 | mdo-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028502 | mdo-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0026290 | ccr-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0026289 | ccr-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0027767 | mmu-miR-6933-3p | 8 | __...... | 3 | 75 |
| MIMAT0025411 | tgu-miR-30e | 3 | _......_ | 8 | 75 |
| MIMAT0025179 | mmu-miR-30f | 2 | _......_ | 7 | 75 |
| MIMAT0024124 | ggo-miR-30e | 3 | _......_ | 8 | 75 |
| MIMAT0024111 | ggo-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0023948 | cgr-miR-384-5p | 3 | _......_ | 8 | 75 |
| MIMAT0023900 | cgr-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0023898 | cgr-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0023896 | cgr-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0023894 | cgr-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0023497 | hco-miR-5985 | 1 | __...... | 6 | 75 |
| MIMAT0023491 | hco-miR-5981 | 6 | _......_ | 1 | 75 |
| MIMAT0023487 | hco-miR-5977 | 8 | _......_ | 3 | 75 |
| MIMAT0022808 | sha-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0022807 | sha-miR-30e | 3 | _......_ | 8 | 75 |
| MIMAT0022666 | ola-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0022599 | ola-miR-30d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0022598 | ola-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0021928 | aca-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021926 | aca-miR-30d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021924 | aca-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021922 | aca-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021920 | aca-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021362 | mtr-miR5294c | 2 | ......__ | 7 | 75 |
| MIMAT0021361 | mtr-miR5294b | 2 | ......__ | 7 | 75 |
| MIMAT0021360 | mtr-miR5294a | 2 | ......__ | 7 | 75 |
| MIMAT0020723 | bdi-miR395d-3p | 8 | __...... | 3 | 75 |
| MIMAT0019877 | hsa-miR-3591-3p | 1 | __...... | 6 | 75 |
| MIMAT0019628 | pma-miR-4595 | 8 | __...... | 3 | 75 |
| MIMAT0019609 | pma-miR-4576 | 8 | _......_ | 3 | 75 |
| MIMAT0019431 | pma-miR-30g | 3 | _......_ | 8 | 75 |
| MIMAT0019430 | pma-miR-30f | 3 | _......_ | 8 | 75 |
| MIMAT0019428 | pma-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019427 | pma-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0019425 | pma-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019424 | pma-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0019422 | pma-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0018720 | tca-miR-3838-5p | 6 | ......__ | 1 | 75 |
| MIMAT0018547 | ame-miR-3771 | 3 | __...... | 8 | 75 |
| MIMAT0018133 | pab-miR3701 | 1 | _......_ | 6 | 75 |
| MIMAT0018056 | dme-miR-3641-3p | 2 | ......__ | 7 | 75 |
| MIMAT0016823 | cin-miR-4203-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016811 | cin-miR-4193-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016641 | cin-miR-4076-3p | 7 | __...... | 2 | 75 |
| MIMAT0015739 | ppy-miR-30e | 3 | _......_ | 8 | 75 |
| MIMAT0015738 | ppy-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0015737 | ppy-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0015736 | ppy-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0015492 | bmo-miR-3304a | 1 | _......_ | 6 | 75 |
| MIMAT0015457 | bmo-miR-3272 | 1 | _......_ | 6 | 75 |
| MIMAT0015453 | bmo-miR-3268-3p | 6 | __...... | 1 | 75 |
| MIMAT0014657 | tgu-miR-30d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014637 | tgu-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014521 | tgu-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0014506 | tgu-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0013872 | ssc-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0013871 | ssc-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0013006 | eca-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0013005 | eca-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0012916 | eca-miR-30e | 3 | _......_ | 8 | 75 |
| MIMAT0012915 | eca-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0012873 | hvt-miR-H17-3p | 1 | _......_ | 6 | 75 |
| MIMAT0013454 | mtr-miR2655o | 7 | ......__ | 2 | 75 |
| MIMAT0013453 | mtr-miR2655n | 7 | ......__ | 2 | 75 |
| MIMAT0013452 | mtr-miR2655m | 7 | ......__ | 2 | 75 |
| MIMAT0013451 | mtr-miR2655l | 7 | ......__ | 2 | 75 |
| MIMAT0013450 | mtr-miR2655k | 7 | ......__ | 2 | 75 |
| MIMAT0013449 | mtr-miR2655j | 7 | ......__ | 2 | 75 |
| MIMAT0013448 | mtr-miR2655i | 7 | ......__ | 2 | 75 |
| MIMAT0013447 | mtr-miR2655h | 7 | ......__ | 2 | 75 |
| MIMAT0013446 | mtr-miR2655g | 7 | ......__ | 2 | 75 |
| MIMAT0013445 | mtr-miR2655f | 7 | ......__ | 2 | 75 |
| MIMAT0013444 | mtr-miR2655e | 7 | ......__ | 2 | 75 |
| MIMAT0013443 | mtr-miR2655d | 7 | ......__ | 2 | 75 |
| MIMAT0013442 | mtr-miR2655c | 7 | ......__ | 2 | 75 |
| MIMAT0013440 | mtr-miR2655a | 7 | ......__ | 2 | 75 |
| MIMAT0010193 | ssc-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0009282 | bta-miR-30f | 3 | _......_ | 8 | 75 |
| MIMAT0008092 | ptr-miR-30e | 3 | _......_ | 8 | 75 |
| MIMAT0007756 | ssc-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0006617 | cfa-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0006616 | cfa-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0006605 | cfa-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0006604 | cfa-miR-30a | 3 | _......_ | 8 | 75 |
| MIMAT0006172 | mml-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0006171 | mml-miR-30d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0006170 | mml-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007462 | gga-miR-1597-5p | 7 | _......_ | 2 | 75 |
| MIMAT0007203 | oan-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007117 | oan-miR-1380-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007043 | oan-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007041 | oan-miR-30d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007037 | oan-miR-30f | 3 | _......_ | 8 | 75 |
| MIMAT0006913 | oan-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0006911 | oan-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005309 | rno-miR-384-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004454 | mdv2-miR-M15-3p | 7 | __...... | 2 | 75 |
| MIMAT0004093 | mdo-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003941 | ath-miR782 | 3 | __...... | 8 | 75 |
| MIMAT0003850 | bta-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0003841 | bta-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003799 | bta-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003791 | bta-miR-142-3p | 7 | __...... | 2 | 75 |
| MIMAT0003678 | xtr-miR-30e | 3 | _......_ | 8 | 75 |
| MIMAT0003657 | xtr-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0003577 | xtr-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0003576 | xtr-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0003574 | xtr-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003547 | bta-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0003533 | bta-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0003023 | tni-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0003022 | fru-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0002950 | tni-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0002949 | fru-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0002948 | tni-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0002947 | fru-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0002620 | ppa-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0002619 | mne-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0002618 | ggo-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0002617 | ptr-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0002616 | mne-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0002615 | lla-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0002614 | ptr-miR-30c | 3 | _......_ | 8 | 75 |
| MIMAT0002377 | ppa-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0002375 | ppy-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0002373 | ggo-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0002371 | ptr-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0002369 | mml-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0002219 | ppa-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0002218 | age-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0002217 | mne-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0002216 | lla-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0002215 | ggo-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0002214 | ptr-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0002213 | mml-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0002191 | kshv-miR-K12-4-5p | 3 | ......__ | 8 | 75 |
| MIMAT0002167 | ssc-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001807 | dre-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001806 | dre-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0001805 | dre-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001804 | dre-miR-30b | 3 | _......_ | 8 | 75 |
| MIMAT0001803 | dre-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001177 | gga-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001137 | gga-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001135 | gga-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001130 | gga-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001129 | gga-miR-30d | 3 | _......_ | 8 | 75 |
| MIMAT0004745 | mmu-miR-384-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000808 | rno-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000807 | rno-miR-30d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000806 | rno-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000805 | rno-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000804 | rno-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000692 | hsa-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000515 | mmu-miR-30d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000514 | mmu-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000420 | hsa-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000248 | mmu-miR-30e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000245 | hsa-miR-30d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000244 | hsa-miR-30c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000130 | mmu-miR-30b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000128 | mmu-miR-30a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000087 | hsa-miR-30a-5p | 3 | _......_ | 8 | 75 |
