| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ctcccctg | 8 | ||
| MIMAT0034863 | efu-miR-9246c | 1 | _....... | 7 | 87 |
| MIMAT0031773 | hbv-miR-B22-3p | 8 | ......._ | 2 | 87 |
| MIMAT0029022 | oan-miR-7422b-5p | 7 | ......._ | 1 | 87 |
| MIMAT0028069 | mmu-miR-7081-3p | 2 | _....... | 8 | 87 |
| MIMAT0028058 | mmu-miR-7076-5p | 7 | ......._ | 1 | 87 |
| MIMAT0028050 | mmu-miR-7072-5p | 8 | ......._ | 2 | 87 |
| MIMAT0027874 | mmu-miR-6986-5p | 7 | ......._ | 1 | 87 |
| MIMAT0027553 | hsa-miR-6826-3p | 1 | ......._ | 7 | 87 |
| MIMAT0027521 | hsa-miR-6810-3p | 1 | _....... | 7 | 87 |
| MIMAT0025173 | mmu-miR-6418-5p | 8 | _....... | 2 | 87 |
| MIMAT0022993 | gma-miR408c-5p | 7 | _....... | 1 | 87 |
| MIMAT0022992 | gma-miR408a-5p | 7 | _....... | 1 | 87 |
| MIMAT0018520 | ame-miR-3718a | 1 | _....... | 7 | 87 |
| MIMAT0011930 | bta-miR-2382-5p | 7 | ......._ | 1 | 87 |
| MIMAT0011878 | bta-miR-2343 | 8 | ......._ | 2 | 87 |
| MIMAT0011475 | cbr-miR-56-5p | 7 | _....... | 1 | 87 |
| MIMAT0019105 | tca-miR-14-5p | 7 | ......._ | 1 | 87 |
| MIMAT0032613 | ssa-miR-30e-3-3p | 8 | ......a. | 1 | 87 |
| MIMAT0027718 | mmu-miR-6909-5p | 8 | .c...... | 1 | 87 |
| MIMAT0027427 | hsa-miR-6763-3p | 1 | ......g. | 8 | 87 |
| MIMAT0027426 | hsa-miR-6763-5p | 8 | ......a. | 1 | 87 |
| MIMAT0023416 | hco-miR-5930 | 8 | .g...... | 1 | 87 |
| MIMAT0015023 | hsa-miR-3150a-3p | 8 | ......a. | 1 | 87 |
| MIMAT0006464 | mml-miR-612 | 8 | ......a. | 1 | 87 |
| MIMAT0036814 | oha-miR-204-2-3p | 7 | __...... | 2 | 75 |
| MIMAT0036146 | chi-miR-331-3p | 1 | __...... | 6 | 75 |
| MIMAT0035381 | nve-miR-2041b-5p | 6 | __...... | 1 | 75 |
| MIMAT0035148 | efu-miR-331 | 2 | __...... | 7 | 75 |
| MIMAT0034948 | efu-miR-9290 | 3 | ......__ | 8 | 75 |
| MIMAT0034501 | eca-miR-8966 | 6 | _......_ | 1 | 75 |
| MIMAT0034463 | eca-miR-8934 | 1 | __...... | 6 | 75 |
| MIMAT0034461 | eca-miR-185 | 6 | __...... | 1 | 75 |
| MIMAT0034325 | cfa-miR-8832 | 8 | __...... | 3 | 75 |
| MIMAT0032795 | cel-miR-8191-5p | 1 | __...... | 6 | 75 |
| MIMAT0031394 | mmu-miR-8093 | 8 | ......__ | 3 | 75 |
| MIMAT0029790 | tgu-miR-7645-5p | 2 | _......_ | 7 | 75 |
| MIMAT0029358 | lja-miR7533b | 7 | _......_ | 2 | 75 |
| MIMAT0029357 | lja-miR7533a | 7 | _......_ | 2 | 75 |
| MIMAT0031150 | aja-miR-331 | 2 | __...... | 7 | 75 |
| MIMAT0028722 | mdo-miR-7355-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028662 | mdo-miR-505-5p | 6 | _......_ | 1 | 75 |
| MIMAT0028350 | mml-miR-7195-5p | 7 | __...... | 2 | 75 |
| MIMAT0028294 | mml-miR-6794-5p | 6 | __...... | 1 | 75 |
| MIMAT0028119 | hsa-miR-7111-5p | 8 | ......__ | 3 | 75 |
| MIMAT0028056 | mmu-miR-7075-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028038 | mmu-miR-7067-5p | 8 | __...... | 3 | 75 |
| MIMAT0027995 | mmu-miR-7045-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027964 | mmu-miR-7030-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027902 | mmu-miR-7000-5p | 6 | _......_ | 1 | 75 |
| MIMAT0027860 | mmu-miR-6979-5p | 6 | ......__ | 1 | 75 |
| MIMAT0027844 | mmu-miR-6971-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027799 | mmu-miR-6949-3p | 2 | _......_ | 7 | 75 |
| MIMAT0027756 | mmu-miR-6928-5p | 6 | _......_ | 1 | 75 |
| MIMAT0027751 | mmu-miR-6925-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027678 | hsa-miR-6889-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027675 | hsa-miR-6887-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027640 | hsa-miR-6870-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027550 | hsa-miR-6825-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027548 | hsa-miR-6824-5p | 8 | _......_ | 3 | 75 |
| MIMAT0027526 | hsa-miR-6813-5p | 6 | __...... | 1 | 75 |
| MIMAT0027503 | hsa-miR-6801-3p | 2 | __...... | 7 | 75 |
| MIMAT0027498 | hsa-miR-6799-5p | 6 | ......__ | 1 | 75 |
| MIMAT0027496 | hsa-miR-6798-5p | 7 | __...... | 2 | 75 |
| MIMAT0027488 | hsa-miR-6794-5p | 6 | __...... | 1 | 75 |
| MIMAT0027482 | hsa-miR-6791-5p | 1 | __...... | 6 | 75 |
| MIMAT0027466 | hsa-miR-6783-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027454 | hsa-miR-6777-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027413 | hsa-miR-6756-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025854 | hsa-miR-6722-3p | 8 | __...... | 3 | 75 |
| MIMAT0025832 | gga-miR-6562-5p | 6 | _......_ | 1 | 75 |
| MIMAT0024541 | cca-miR6107 | 8 | _......_ | 3 | 75 |
| MIMAT0024128 | ggo-miR-331 | 2 | __...... | 7 | 75 |
| MIMAT0023917 | cgr-miR-331-3p | 2 | __...... | 7 | 75 |
| MIMAT0023715 | hsa-miR-6090 | 6 | ......__ | 1 | 75 |
| MIMAT0023366 | hco-miR-5910 | 2 | ......__ | 7 | 75 |
| MIMAT0022491 | hsa-miR-5698 | 8 | ......__ | 3 | 75 |
| MIMAT0021314 | mtr-miR5276 | 8 | ......__ | 3 | 75 |
| MIMAT0021074 | gma-miR5043 | 3 | _......_ | 8 | 75 |
| MIMAT0019838 | hsa-miR-4723-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027038 | hsa-miR-1343-5p | 7 | ......__ | 2 | 75 |
| MIMAT0019716 | hsa-miR-4652-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019356 | mmu-miR-3971 | 1 | ......__ | 6 | 75 |
| MIMAT0018884 | tca-miR-3892-5p | 3 | __...... | 8 | 75 |
| MIMAT0017974 | ssc-miR-484 | 8 | __...... | 3 | 75 |
| MIMAT0016919 | hsa-miR-4292 | 1 | __...... | 6 | 75 |
| MIMAT0016468 | cin-miR-4005b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016139 | ppy-miR-939 | 7 | ......__ | 2 | 75 |
| MIMAT0015836 | ppy-miR-331-3p | 2 | __...... | 7 | 75 |
| MIMAT0015052 | hsa-miR-3175 | 7 | ......__ | 2 | 75 |
| MIMAT0015014 | hsa-miR-3144-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019201 | hsa-miR-3127-3p | 1 | _......_ | 6 | 75 |
| MIMAT0014905 | mmu-miR-3092-5p | 6 | _......_ | 1 | 75 |
| MIMAT0014860 | mmu-miR-3076-5p | 8 | __...... | 3 | 75 |
| MIMAT0014846 | mmu-miR-3070-5p | 3 | __...... | 8 | 75 |
| MIMAT0014621 | tgu-miR-2962-3p | 3 | _......_ | 8 | 75 |
| MIMAT0013930 | ssc-miR-331-3p | 2 | __...... | 7 | 75 |
| MIMAT0013188 | eca-miR-331 | 2 | __...... | 7 | 75 |
| MIMAT0011947 | bta-miR-2394 | 3 | ......__ | 8 | 75 |
| MIMAT0011942 | bta-miR-2389 | 7 | _......_ | 2 | 75 |
| MIMAT0011839 | bta-miR-1343-5p | 7 | ......__ | 2 | 75 |
| MIMAT0011735 | ppc-miR-2247 | 2 | ......__ | 7 | 75 |
| MIMAT0009895 | cfa-miR-331 | 2 | __...... | 7 | 75 |
| MIMAT0008346 | ptr-miR-939 | 7 | ......__ | 2 | 75 |
| MIMAT0008336 | ptr-miR-920 | 6 | ......__ | 1 | 75 |
| MIMAT0008103 | ptr-miR-331 | 2 | __...... | 7 | 75 |
| MIMAT0007883 | hsa-miR-1909-3p | 8 | __...... | 3 | 75 |
| MIMAT0007877 | mmu-miR-1894-5p | 3 | ......__ | 8 | 75 |
| MIMAT0015267 | cel-miR-1829a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0006540 | mml-miR-939 | 7 | ......__ | 2 | 75 |
| MIMAT0006532 | mml-miR-920 | 6 | ......__ | 1 | 75 |
| MIMAT0026892 | mml-miR-505-5p | 6 | ......__ | 1 | 75 |
| MIMAT0006273 | mml-miR-331-3p | 2 | __...... | 7 | 75 |
| MIMAT0026846 | mml-miR-210-5p | 3 | __...... | 8 | 75 |
| MIMAT0007685 | gga-miR-1774 | 1 | __...... | 6 | 75 |
| MIMAT0007683 | gga-miR-1773-5p | 8 | ......__ | 3 | 75 |
| MIMAT0007668 | gga-miR-1761 | 6 | __...... | 1 | 75 |
| MIMAT0007438 | gga-miR-1577 | 8 | __...... | 3 | 75 |
| MIMAT0007225 | oan-miR-1408 | 7 | ......__ | 2 | 75 |
| MIMAT0006989 | oan-miR-155-3p | 1 | __...... | 6 | 75 |
| MIMAT0006874 | oan-miR-1343-5p | 7 | _......_ | 2 | 75 |
| MIMAT0005540 | mcmv-miR-m21-1 | 8 | _......_ | 3 | 75 |
| MIMAT0005149 | ppt-miR1039-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004982 | hsa-miR-939-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004410 | rrv-miR-rR1-4-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004970 | hsa-miR-920 | 6 | ......__ | 1 | 75 |
| MIMAT0004339 | bta-miR-331-3p | 2 | __...... | 7 | 75 |
| MIMAT0004276 | ath-miR853 | 1 | _......_ | 6 | 75 |
| MIMAT0004060 | osa-miR815c | 7 | _......_ | 2 | 75 |
| MIMAT0004059 | osa-miR815b | 7 | _......_ | 2 | 75 |
| MIMAT0004058 | osa-miR815a | 7 | _......_ | 2 | 75 |
| MIMAT0015238 | kshv-miR-K12-12-3p | 8 | ......__ | 3 | 75 |
| MIMAT0015227 | bmo-miR-14-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032008 | dre-miR-139-3p | 7 | ......__ | 2 | 75 |
| MIMAT0001474 | ame-miR-125 | 1 | __...... | 6 | 75 |
| MIMAT0000760 | hsa-miR-331-3p | 2 | __...... | 7 | 75 |
| MIMAT0000571 | mmu-miR-331-3p | 2 | __...... | 7 | 75 |
| MIMAT0000570 | rno-miR-331-3p | 2 | __...... | 7 | 75 |
| MIMAT0026475 | hsa-miR-210-5p | 3 | __...... | 8 | 75 |
