Result for your query miRNA sequence
>hvt-miR-h18-3p
cugagaua

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1ctgagata8
MIMAT0012875hvt-miR-H18-3p1........8100
MIMAT0036714oha-miR-1388-3p7......._187
MIMAT0035959chi-miR-1388-3p7......._187
MIMAT0034307cfa-miR-88172_.......887
MIMAT0033683sma-miR-8481-5p2......._887
MIMAT0032336ssa-miR-1338-3p7......._187
MIMAT0029588cbr-miR-75851_.......787
MIMAT0029587cbr-miR-75841_.......787
MIMAT0029415ipu-miR-13887......._187
MIMAT0028931mdo-miR-7398g-3p7_.......187
MIMAT0025635gga-miR-6565-5p2_.......887
MIMAT0022772sha-miR-3527......._187
MIMAT0022568ola-miR-1388-3p7......._187
MIMAT0021761aca-miR-1388-3p7......._187
MIMAT0021240mtr-miR52447_.......187
MIMAT0019607pma-miR-45742......._887
MIMAT0018173mghv-miR-M1-13-3p7_.......187
MIMAT0014594tgu-miR-1388-3p7......._187
MIMAT0013591bta-miR-1388-3p7......._187
MIMAT0012423dsi-miR-9771_.......787
MIMAT0011293dre-miR-1388-3p7......._187
MIMAT0032089dvi-miR-285-5p2......._887
MIMAT0007328gga-miR-14522_.......887
MIMAT0007169oan-miR-1388-3p7......._187
MIMAT0005493dme-miR-977-3p1_.......787
MIMAT0002559ptr-miR-216a8_.......287
MIMAT0020817dme-miR-285-5p2......._887
MIMAT0022356mmu-miR-5615-3p8......c.187
MIMAT0015117cel-miR-243-5p8.c......187
MIMAT0037154ata-miR9772b-5p1_......_675
MIMAT0037106ata-miR9772a-5p1_......_675
MIMAT0037060ssc-miR-9842-5p6......__175
MIMAT0036982tae-miR97721_......_675
MIMAT0036833oha-miR-216-5p8_......_375
MIMAT0036724oha-miR-143-3p1_......_675
MIMAT0036716oha-miR-139-3p3__......875
MIMAT0036476tch-miR-143-3p1_......_675
MIMAT0036339gma-miR97243__......875
MIMAT0035964chi-miR-143-3p1_......_675
MIMAT0035649dvi-miR-977-3p2__......775
MIMAT0035619dvi-miR-9538-3p2_......_775
MIMAT0035580dvi-miR-958-3p1_......_675
MIMAT0035429nve-miR-94642......__775
MIMAT0035410nve-miR-94496__......175
MIMAT0035291gsa-bantam-3p1_......_675
MIMAT0035255gsa-miR-1175-3p1_......_675
MIMAT0035123efu-miR-1433......__875
MIMAT0035084efu-miR-93351_......_675
MIMAT0034652eca-miR-91052......__775
MIMAT0034635eca-miR-90901_......_675
MIMAT0034632eca-miR-90872_......_775
MIMAT0034615eca-miR-90701_......_675
MIMAT0034470eca-miR-89412......__775
MIMAT0034296cfa-miR-88061_......_675
MIMAT0033889atr-miR86006_......_175
MIMAT0033790pxy-miR-8536b-3p8__......375
MIMAT0033726pxy-bantam1_......_675
MIMAT0033671sma-miR-8475-5p6__......175
MIMAT0033632sma-miR-755-3p1_......_675
MIMAT0033584sma-miR-8440-5p3......__875
MIMAT0033465str-miR-58-3p1_......_675
MIMAT0033429str-miR-8384-3p1_......_675
MIMAT0033377str-miR-1175-3p1_......_675
MIMAT0033345str-miR-81c-3p1_......_675
MIMAT0033343str-miR-81b-3p1_......_675
MIMAT0033332str-miR-81a-3p1_......_675
MIMAT0033314str-bantam-3p1_......_675
MIMAT0033096ppc-miR-8291-3p8__......375
MIMAT0033060ppc-miR-8364q-3p2__......775
MIMAT0032906ppc-miR-8230-5p8_......_375
MIMAT0032858ppc-miR-8214-5p2_......_775
MIMAT0032518ssa-miR-216b-5p8_......_375
MIMAT0032366ssa-miR-143-3p1_......_675
MIMAT0032357ssa-miR-139-3p3__......875
MIMAT0031739bma-miR-11751_......_675
MIMAT0031646bbe-miR-216-5p8_......_375
MIMAT0030925stu-miR1886i-5p2_......_775
MIMAT0030847stu-miR7980a2_......_775
MIMAT0030689prd-miR-81-3p1_......_675
MIMAT0030561prd-miR-58-3p1_......_675
MIMAT0030553prd-miR-7873b-3p8_......_375
MIMAT0030503prd-miR-1175-3p1_......_675
MIMAT0030492prd-miR-7874-5p8_......_375
MIMAT0032259rgl-miR7807b-3p2_......_775
MIMAT0030308bdi-miR7777-3p.21_......_675
MIMAT0030032oar-miR-1431_......_675
MIMAT0029952bta-miR-76912......__775
MIMAT0029769cbn-miR-2598_......_375
MIMAT0029694cbn-miR-821_......_675
MIMAT0029693cbn-miR-58a1_......_675
MIMAT0029692cbn-miR-811_......_675
MIMAT0029691cbn-miR-801_......_675
MIMAT0029637crm-miR-58c1_......_675
MIMAT0029619crm-miR-76021_......_675
MIMAT0029573ipu-miR-75748__......375
MIMAT0029557ipu-miR-7558b3......__875
MIMAT0029554ipu-miR-7558a3......__875
MIMAT0029467ipu-miR-216a8_......_375
MIMAT0029420ipu-miR-1431_......_675
MIMAT0031147aja-miR-1431_......_675
MIMAT0028984oan-miR-7418-5p8__......375
MIMAT0028969oan-miR-7411-3p1__......675
MIMAT0028341mml-miR-7191-3p8......__375
MIMAT0028266mml-miR-7166-5p7......__275
MIMAT0028148ssc-miR-7136-3p6......__175
MIMAT0026224ccr-miR-1431_......_675
MIMAT0028086mmu-miR-7090-5p6......__175
MIMAT0028005mmu-miR-7050-3p6......__175
MIMAT0027966mmu-miR-7031-5p2......__775
MIMAT0027956mmu-miR-7026-5p3......__875
MIMAT0027475hsa-miR-6787-3p6......__175
MIMAT0027422hsa-miR-6761-5p2......__775
MIMAT0025775gga-miR-6673-3p3......__875
MIMAT0025730gga-miR-6634-5p6......__175
MIMAT0025689gga-miR-6595-5p1_......_675
MIMAT0025399tgu-miR-1467-5p7......__275
MIMAT0024930hme-bantam1_......_675
MIMAT0024837hvu-miR62091_......_675
MIMAT0024452mse-bantam1_......_675
MIMAT0023772cgr-miR-1431_......_675
MIMAT0023484hco-miR-5885c1_......_675
MIMAT0023417hco-miR-5885b1_......_675
MIMAT0023333hco-miR-2598_......_375
MIMAT0023319hco-miR-5885a1_......_675
MIMAT0023171gma-miR57716_......_175
MIMAT0022777sha-miR-216a8_......_375
MIMAT0022668ola-miR-1431_......_675
MIMAT0023104tur-miR-5737-5p8_......_375
MIMAT0022162osa-miR55276......__175
MIMAT0022024aca-miR-5408a-5p7__......275
MIMAT0021875aca-miR-216a8_......_375
MIMAT0021770aca-miR-143-3p1_......_675
MIMAT0021763aca-miR-139-3p3__......875
MIMAT0021609gma-miR5371-3p6......__175
MIMAT0021534asu-miR-1175-3p1_......_675
MIMAT0021474asu-miR-81a1_......_675
MIMAT0021422asu-miR-81c-3p1_......_675
MIMAT0021420asu-miR-81b-3p1_......_675
MIMAT0021377isc-miR-53078_......_375
MIMAT0020627mmu-miR-51197_......_275
MIMAT0019973hsa-miR-4797-3p6......__175
MIMAT0019924hsa-miR-47701_......_675
MIMAT0019789hsa-miR-4695-3p8_......_375
MIMAT0019525pma-miR-216a-5p8_......_375
MIMAT0019473pma-miR-143-3p1_......_675
MIMAT0018894tca-miR-3896-5p7__......275
MIMAT0018819tca-miR-1175-3p1_......_675
MIMAT0018736tca-miR-3477-5p8_......_375
MIMAT0018583ame-miR-34778_......_375
MIMAT0018507ame-miR-11751_......_675
MIMAT0019220hsa-miR-3664-3p6......__175
MIMAT0016923hsa-miR-43292......__775
MIMAT0016883hsa-miR-42512......__775
MIMAT0016876hsa-miR-43243......__875
MIMAT0017920aly-miR3444b6_......_175
MIMAT0016286sja-miR-3483-5p3......__875
MIMAT0016272sja-miR-2162-5p3_......_875
MIMAT0015696nvi-bantam1_......_675
MIMAT0015642mmu-miR-34711_......_675
MIMAT0017739ath-miR774b-5p1_......_675
MIMAT0017722aly-miR3444a-3p7_......_275
MIMAT0017699aly-miR774b-5p1_......_675
MIMAT0015624bmo-miR-34173__......875
MIMAT0015479bmo-miR-32921_......_675
MIMAT0015449bmo-miR-32652......__775
MIMAT0014791api-miR-30501_......_675
MIMAT0014576tgu-miR-216a-5p8_......_375
MIMAT0014623tgu-miR-2954-5p2......__775
MIMAT0014440cqu-miR-1889-5p8_......_375
MIMAT0014421cqu-bantam-3p1_......_675
MIMAT0014391cqu-miR-1175-3p1_......_675
MIMAT0015371aae-miR-1175-3p1_......_675
MIMAT0014233aae-miR-1889-5p8_......_375
MIMAT0014219aae-bantam-3p1_......_675
MIMAT0014130api-bantam1_......_675
MIMAT0014093bma-bantam1_......_675
MIMAT0013879ssc-miR-143-3p1_......_675
MIMAT0013072eca-miR-216a8_......_375
MIMAT0013063eca-miR-1431_......_675
MIMAT0026936mdo-miR-139-3p3__......875
MIMAT0013613bmo-miR-1175-3p1_......_675
MIMAT0012679isc-bantam1_......_675
MIMAT0012634dpu-bantam1_......_675
MIMAT0012446dsi-miR-958-3p1_......_675
MIMAT0012437dsi-miR-967-5p2__......775
MIMAT0012232dps-miR-958-3p1_......_675
MIMAT0011715ppc-miR-22501_......_675
MIMAT0011656ppc-miR-811_......_675
MIMAT0011621crm-miR-80-3p1_......_675
MIMAT0011615crm-miR-58b-3p1_......_675
MIMAT0011607crm-miR-2598_......_375
MIMAT0011570crm-miR-81-3p1_......_675
MIMAT0011539crm-miR-821_......_675
MIMAT0011482cbr-miR-58b1_......_675
MIMAT0012169sme-miR-753e-3p1_......_675
MIMAT0011249sme-miR-1175-3p1_......_675
MIMAT0011245sme-miR-216-5p8_......_375
MIMAT0011226sme-miR-753b-3p1_......_675
MIMAT0010182sma-bantam-3p1_......_675
MIMAT0010177sja-bantam1_......_675
MIMAT0010099tca-miR-3048_......_375
MIMAT0010091tca-bantam-3p1_......_675
MIMAT0009849cfa-miR-216a8_......_375
MIMAT0009603lgi-miR-1175-3p1_......_675
MIMAT0009588lgi-miR-216a8_......_375
MIMAT0009551cte-bantam1_......_675
MIMAT0009550cte-miR-1175-3p1_......_675
MIMAT0009535cte-miR-216a8_......_375
MIMAT0009495bfl-miR-216-5p8_......_375
MIMAT0009149bkv-miR-B1-5p3......__875
MIMAT0009147jcv-miR-J1-5p3......__875
MIMAT0009265bta-miR-216a8_......_375
MIMAT0009233bta-miR-1431_......_675
MIMAT0009073dya-miR-3048_......_375
MIMAT0009057dya-bantam1_......_675
MIMAT0009011dwi-miR-3048_......_375
MIMAT0008985dwi-bantam1_......_675
MIMAT0008976dvi-miR-304-5p8_......_375
MIMAT0008966dvi-bantam-3p1_......_675
MIMAT0008882dsi-miR-3048_......_375
MIMAT0008861dsi-bantam1_......_675
MIMAT0008801dse-miR-3048_......_375
MIMAT0008775dse-bantam1_......_675
MIMAT0008721dpe-bantam1_......_675
MIMAT0008657dmo-miR-3048_......_375
MIMAT0008634dmo-bantam1_......_675
MIMAT0008595dgr-miR-3048_......_375
MIMAT0008559dgr-bantam1_......_675
MIMAT0008548der-miR-3048_......_375
MIMAT0008533der-bantam1_......_675
MIMAT0008413dan-miR-3048_......_375
MIMAT0008409dan-bantam1_......_675
MIMAT0007907bmo-bantam-3p1_......_675
MIMAT0012129ath-miR1886.21_......_675
MIMAT0006682cfa-miR-1431_......_675
MIMAT0006630cfa-miR-18376......__175
MIMAT0006242mml-miR-216a-5p8_......_375
MIMAT0006201mml-miR-143-3p1_......_675
MIMAT0006134csa-miR-216a8_......_375
MIMAT0006111cin-miR-2168_......_375
MIMAT0007345gga-miR-1467-5p6......__175
MIMAT0007229oan-miR-14111__......675
MIMAT0007223oan-miR-216a-5p8_......_375
MIMAT0007144oan-miR-143-3p1_......_675
MIMAT0022719hsa-miR-1285-5p7_......_275
MIMAT0005525aga-miR-11751_......_675
MIMAT0017294rno-miR-883-5p3......__875
MIMAT0005482dme-miR-967-5p2__......775
MIMAT0005471dme-miR-958-3p1_......_675
MIMAT0005014pta-miR952b3......__875
MIMAT0004399cre-miR919.26......__175
MIMAT0004369ppt-miR8993......__875
MIMAT0004850mmu-miR-883b-5p3......__875
MIMAT0004848mmu-miR-883a-5p3......__875
MIMAT0004131mdo-miR-2168_......_375
MIMAT0004113mdo-miR-143-3p1_......_675
MIMAT0012126sme-miR-755-3p2_......_775
MIMAT0004005sme-miR-747-5p8_......_375
MIMAT0003951sme-bantam-c-3p1_......_675
MIMAT0003950sme-bantam-b-3p1_......_675
MIMAT0003949sme-bantam-a1_......_675
MIMAT0003686xtr-miR-1431_......_675
MIMAT0003629xtr-miR-2168_......_375
MIMAT0002974tni-miR-216a8_......_375
MIMAT0002973fru-miR-216a8_......_375
MIMAT0002562ppa-miR-2168_......_375
MIMAT0002561ppy-miR-216a8_......_375
MIMAT0002560ggo-miR-2168_......_375
MIMAT0002558lca-miR-2168_......_375
MIMAT0002261ppa-miR-1431_......_675
MIMAT0002260lla-miR-1431_......_675
MIMAT0002259ppy-miR-1431_......_675
MIMAT0002258ggo-miR-1431_......_675
MIMAT0002257ptr-miR-1431_......_675
MIMAT0002130ssc-miR-2168_......_375
MIMAT0001840dre-miR-1431_......_675
MIMAT0001494aga-bantam1_......_675
MIMAT0001470ame-bantam1_......_675
MIMAT0001284dre-miR-216a8_......_375
MIMAT0001254dps-miR-3048_......_375
MIMAT0001197dps-bantam1_......_675
MIMAT0001131gga-miR-216a8_......_375
MIMAT0000886rno-miR-216a-5p8_......_375
MIMAT0000849rno-miR-143-3p1_......_675
MIMAT0000662mmu-miR-216a-5p8_......_375
MIMAT0000508cbr-miR-2598_......_375
MIMAT0000489cbr-miR-821_......_675
MIMAT0000488cbr-miR-811_......_675
MIMAT0000487cbr-miR-801_......_675
MIMAT0000478cbr-miR-58a1_......_675
MIMAT0000435hsa-miR-143-3p1_......_675
MIMAT0000390dme-miR-304-5p8_......_375
MIMAT0000365dme-bantam-3p1_......_675
MIMAT0000314cel-miR-259-5p8_......_375
MIMAT0000273hsa-miR-216a-5p8_......_375
MIMAT0000247mmu-miR-143-3p1_......_675
MIMAT0000055cel-miR-82-3p1_......_675
MIMAT0000054cel-miR-81-3p1_......_675
MIMAT0000053cel-miR-80-3p1_......_675
MIMAT0000030cel-miR-58a-3p1_......_675