| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaacctg | 7 | ||
| MIMAT0034554 | eca-miR-9013 | 7 | ....... | 1 | 100 |
| MIMAT0007432 | gga-miR-1572 | 1 | ....... | 7 | 100 |
| MIMAT0036937 | oha-miR-490-3p | 2 | _...... | 7 | 85 |
| MIMAT0036250 | chi-miR-490 | 2 | _...... | 7 | 85 |
| MIMAT0036080 | chi-miR-2284d | 3 | _...... | 8 | 85 |
| MIMAT0034870 | efu-miR-9252 | 6 | _...... | 1 | 85 |
| MIMAT0032821 | cel-miR-4810b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0031853 | cpa-miR8155 | 2 | _...... | 7 | 85 |
| MIMAT0031847 | cpa-miR8150 | 3 | _...... | 8 | 85 |
| MIMAT0031580 | bbe-miR-125a-3p | 7 | _...... | 2 | 85 |
| MIMAT0030818 | prd-miR-76-5p | 7 | _...... | 2 | 85 |
| MIMAT0030759 | prd-miR-7947-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030440 | bta-miR-2285ac | 3 | _...... | 8 | 85 |
| MIMAT0030436 | bta-miR-2285ab | 3 | _...... | 8 | 85 |
| MIMAT0030016 | mtr-miR7701-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028668 | mdo-miR-7331-5p | 1 | _...... | 6 | 85 |
| MIMAT0028405 | mmu-miR-7218-3p | 3 | _...... | 8 | 85 |
| MIMAT0028363 | mml-miR-7199-3p | 8 | _...... | 3 | 85 |
| MIMAT0027925 | mmu-miR-7010-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025751 | gga-miR-6651-5p | 8 | _...... | 3 | 85 |
| MIMAT0025376 | ssc-miR-490 | 2 | _...... | 7 | 85 |
| MIMAT0025054 | rno-miR-6317 | 3 | ......_ | 8 | 85 |
| MIMAT0025012 | hme-miR-6306-5p | 8 | ......_ | 3 | 85 |
| MIMAT0024582 | bta-miR-2285g | 2 | _...... | 7 | 85 |
| MIMAT0024581 | bta-miR-2285f | 3 | _...... | 8 | 85 |
| MIMAT0024580 | bta-miR-2285e | 2 | _...... | 7 | 85 |
| MIMAT0024205 | ggo-miR-490 | 2 | _...... | 7 | 85 |
| MIMAT0023985 | cgr-miR-582 | 2 | _...... | 7 | 85 |
| MIMAT0023784 | cgr-miR-152-5p | 6 | ......_ | 1 | 85 |
| MIMAT0022107 | pti-miR5474 | 1 | _...... | 6 | 85 |
| MIMAT0021977 | aca-miR-490-3p | 2 | _...... | 7 | 85 |
| MIMAT0021889 | aca-miR-221-5p | 1 | _...... | 6 | 85 |
| MIMAT0021560 | asu-miR-5351-5p | 6 | _...... | 1 | 85 |
| MIMAT0021542 | asu-miR-100e-5p | 1 | _...... | 6 | 85 |
| MIMAT0027073 | bdi-miR169c-3p | 8 | _...... | 3 | 85 |
| MIMAT0020650 | rgl-miR5139 | 2 | _...... | 7 | 85 |
| MIMAT0022985 | mmu-miR-5107-3p | 2 | _...... | 7 | 85 |
| MIMAT0022960 | ssc-miR-490-3p | 2 | _...... | 7 | 85 |
| MIMAT0016073 | ppy-miR-634 | 1 | _...... | 6 | 85 |
| MIMAT0015910 | ppy-miR-490-3p | 2 | _...... | 7 | 85 |
| MIMAT0015586 | bmo-miR-3387-3p | 8 | _...... | 3 | 85 |
| MIMAT0014548 | tgu-miR-490-3p | 2 | _...... | 7 | 85 |
| MIMAT0012945 | eca-miR-490-3p | 2 | _...... | 7 | 85 |
| MIMAT0017360 | rno-miR-582-3p | 1 | _...... | 6 | 85 |
| MIMAT0012823 | rno-miR-490-3p | 2 | _...... | 7 | 85 |
| MIMAT0012402 | dps-miR-2567b-5p | 8 | _...... | 3 | 85 |
| MIMAT0012396 | dps-miR-2567a-5p | 8 | _...... | 3 | 85 |
| MIMAT0011950 | bta-miR-2285c | 2 | _...... | 7 | 85 |
| MIMAT0011828 | bta-miR-2312 | 3 | _...... | 8 | 85 |
| MIMAT0011815 | bta-miR-2285d | 2 | _...... | 7 | 85 |
| MIMAT0011469 | cbr-miR-35d-5p | 8 | _...... | 3 | 85 |
| MIMAT0009875 | cfa-miR-490 | 2 | _...... | 7 | 85 |
| MIMAT0019166 | spu-miR-2003-3p | 6 | _...... | 1 | 85 |
| MIMAT0019161 | spu-miR-125-3p | 7 | _...... | 2 | 85 |
| MIMAT0019147 | bfl-miR-125a-3p | 7 | _...... | 2 | 85 |
| MIMAT0009331 | bta-miR-490 | 2 | _...... | 7 | 85 |
| MIMAT0008306 | ptr-miR-657 | 8 | _...... | 3 | 85 |
| MIMAT0008300 | ptr-miR-649 | 2 | _...... | 7 | 85 |
| MIMAT0008165 | ptr-miR-490 | 2 | _...... | 7 | 85 |
| MIMAT0006487 | mml-miR-649 | 2 | _...... | 7 | 85 |
| MIMAT0006351 | mml-miR-490-3p | 2 | _...... | 7 | 85 |
| MIMAT0026829 | mml-miR-152-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007311 | oan-miR-1421al-5p | 6 | _...... | 1 | 85 |
| MIMAT0007264 | oan-miR-1421af-5p | 8 | _...... | 3 | 85 |
| MIMAT0007261 | oan-miR-1421ae | 8 | _...... | 3 | 85 |
| MIMAT0007259 | oan-miR-1421ad-5p | 8 | _...... | 3 | 85 |
| MIMAT0007236 | oan-miR-1421v-5p | 8 | _...... | 3 | 85 |
| MIMAT0007086 | oan-miR-1421t-5p | 8 | _...... | 3 | 85 |
| MIMAT0007082 | oan-miR-1421r-5p | 8 | _...... | 3 | 85 |
| MIMAT0007066 | oan-miR-1421k-5p | 8 | _...... | 3 | 85 |
| MIMAT0006963 | oan-miR-1421a-5p | 6 | _...... | 1 | 85 |
| MIMAT0006811 | oan-miR-490-3p | 2 | _...... | 7 | 85 |
| MIMAT0005292 | mmu-miR-582-3p | 2 | _...... | 7 | 85 |
| MIMAT0026671 | mdo-miR-152-5p | 6 | ......_ | 1 | 85 |
| MIMAT0003780 | mmu-miR-490-3p | 2 | _...... | 7 | 85 |
| MIMAT0003427 | rlcv-miR-rL1-1-5p | 2 | _...... | 7 | 85 |
| MIMAT0003366 | gga-miR-490-3p | 2 | _...... | 7 | 85 |
| MIMAT0003335 | hsa-miR-657 | 8 | _...... | 3 | 85 |
| MIMAT0003319 | hsa-miR-649 | 2 | _...... | 7 | 85 |
| MIMAT0002806 | hsa-miR-490-3p | 2 | _...... | 7 | 85 |
| MIMAT0022898 | ptc-miR169b-3p | 8 | _...... | 3 | 85 |
| MIMAT0031965 | dre-miR-125b-3-3p | 7 | _...... | 2 | 85 |
| MIMAT0026494 | gga-miR-221-5p | 1 | _...... | 6 | 85 |
| MIMAT0000995 | ebv-miR-BHRF1-1 | 2 | _...... | 7 | 85 |
| MIMAT0017134 | rno-miR-152-5p | 6 | ......_ | 1 | 85 |
| MIMAT0026479 | hsa-miR-152-5p | 6 | ......_ | 1 | 85 |
