| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaaggct | 7 | ||
| MIMAT0025603 | gga-miR-6549-5p | 7 | ....... | 1 | 100 |
| MIMAT0022275 | hsa-miR-5581-5p | 7 | ....... | 1 | 100 |
| MIMAT0017993 | hsa-miR-3614-3p | 8 | ....... | 2 | 100 |
| MIMAT0012725 | iltv-miR-I2 | 2 | ....... | 8 | 100 |
| MIMAT0011962 | bta-miR-449d | 1 | ....... | 7 | 100 |
| MIMAT0037138 | ata-miR5200-5p | 7 | _...... | 2 | 85 |
| MIMAT0036424 | ggo-miR-524-3p | 1 | ......_ | 6 | 85 |
| MIMAT0036413 | ggo-miR-525-3p | 1 | ......_ | 6 | 85 |
| MIMAT0036246 | chi-miR-487a-5p | 6 | _...... | 1 | 85 |
| MIMAT0034517 | eca-miR-8980 | 8 | _...... | 3 | 85 |
| MIMAT0033860 | atr-miR8577 | 3 | _...... | 8 | 85 |
| MIMAT0030975 | stu-miR8049-5p | 2 | _...... | 7 | 85 |
| MIMAT0029042 | gga-miR-7444-5p | 3 | _...... | 8 | 85 |
| MIMAT0028321 | mml-miR-7184-3p | 8 | _...... | 3 | 85 |
| MIMAT0028053 | mmu-miR-7073-3p | 8 | _...... | 3 | 85 |
| MIMAT0027661 | hsa-miR-6880-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025624 | gga-miR-6558-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025621 | gga-miR-6556-5p | 1 | _...... | 6 | 85 |
| MIMAT0025109 | mmu-miR-6365 | 8 | _...... | 3 | 85 |
| MIMAT0025091 | mmu-miR-6348 | 8 | _...... | 3 | 85 |
| MIMAT0027305 | ppe-miR6276 | 2 | _...... | 7 | 85 |
| MIMAT0024599 | hsa-miR-6126 | 3 | ......_ | 8 | 85 |
| MIMAT0022240 | mtr-miR2111a-3p | 6 | _...... | 1 | 85 |
| MIMAT0022187 | cel-miR-5548-5p | 6 | ......_ | 1 | 85 |
| MIMAT0020559 | osa-miR5074 | 1 | ......_ | 6 | 85 |
| MIMAT0018165 | hsa-miR-3714 | 1 | ......_ | 6 | 85 |
| MIMAT0017944 | ath-miR4228-5p | 8 | _...... | 3 | 85 |
| MIMAT0017916 | aly-miR4228 | 8 | _...... | 3 | 85 |
| MIMAT0017819 | rno-miR-3557-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017796 | rno-miR-3542 | 1 | _...... | 6 | 85 |
| MIMAT0015983 | ppy-miR-525-3p | 1 | ......_ | 6 | 85 |
| MIMAT0015981 | ppy-miR-524-3p | 1 | ......_ | 6 | 85 |
| MIMAT0015626 | bmo-miR-3419 | 8 | _...... | 3 | 85 |
| MIMAT0019193 | rlcv-miR-rL1-28-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026927 | mtr-miR2111e-3p | 6 | _...... | 1 | 85 |
| MIMAT0012210 | dme-miR-2498-5p | 3 | _...... | 8 | 85 |
| MIMAT0011939 | bta-miR-2387 | 3 | ......_ | 8 | 85 |
| MIMAT0011471 | cbr-miR-90b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0011419 | sme-miR-2203-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015294 | bmo-miR-970-5p | 6 | _...... | 1 | 85 |
| MIMAT0009386 | bta-miR-940 | 1 | _...... | 6 | 85 |
| MIMAT0008209 | ptr-miR-525 | 1 | ......_ | 6 | 85 |
| MIMAT0008208 | ptr-miR-524 | 1 | ......_ | 6 | 85 |
| MIMAT0005145 | ppt-miR1037 | 6 | _...... | 1 | 85 |
| MIMAT0004233 | cel-miR-798 | 8 | _...... | 3 | 85 |
| MIMAT0012101 | sme-miR-13-5p | 7 | _...... | 2 | 85 |
| MIMAT0012086 | sme-bantam-c-5p | 1 | _...... | 6 | 85 |
| MIMAT0017256 | mmu-miR-700-5p | 2 | _...... | 7 | 85 |
| MIMAT0003469 | mmu-miR-690 | 2 | _...... | 7 | 85 |
| MIMAT0002850 | hsa-miR-524-3p | 1 | ......_ | 6 | 85 |
| MIMAT0002839 | hsa-miR-525-3p | 1 | ......_ | 6 | 85 |
| MIMAT0017168 | rno-miR-320-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017057 | mmu-miR-320-5p | 6 | ......_ | 1 | 85 |
