| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaccaga | 7 | ||
| MIMAT0028215 | hsa-miR-7152-3p | 7 | ....... | 1 | 100 |
| MIMAT0028147 | ssc-miR-7136-5p | 7 | ....... | 1 | 100 |
| MIMAT0025342 | pde-miR950 | 7 | ....... | 1 | 100 |
| MIMAT0015543 | bmo-miR-3357 | 7 | ....... | 1 | 100 |
| MIMAT0009398 | mmu-miR-1934-5p | 7 | ....... | 1 | 100 |
| MIMAT0003441 | rlcv-miR-rL1-12-5p | 2 | ....... | 8 | 100 |
| MIMAT0031181 | hsa-miR-7978 | 6 | _...... | 1 | 85 |
| MIMAT0028889 | mdo-miR-7395-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028528 | mdo-miR-7277-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028150 | ssc-miR-7137-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027549 | hsa-miR-6824-3p | 8 | _...... | 3 | 85 |
| MIMAT0027429 | hsa-miR-6764-3p | 8 | _...... | 3 | 85 |
| MIMAT0025743 | gga-miR-6646-3p | 6 | _...... | 1 | 85 |
| MIMAT0025194 | ptc-miR6466-5p | 6 | _...... | 1 | 85 |
| MIMAT0025065 | rno-miR-6326 | 6 | ......_ | 1 | 85 |
| MIMAT0027295 | ppe-miR6270 | 7 | _...... | 2 | 85 |
| MIMAT0024615 | hsa-miR-6131 | 8 | ......_ | 3 | 85 |
| MIMAT0024605 | ptr-miR-6131 | 8 | ......_ | 3 | 85 |
| MIMAT0024382 | ppy-miR-4774 | 6 | _...... | 1 | 85 |
| MIMAT0023247 | gma-miR166m | 3 | ......_ | 8 | 85 |
| MIMAT0021529 | asu-miR-791-5p | 6 | ......_ | 1 | 85 |
| MIMAT0021212 | mtr-miR5228 | 6 | _...... | 1 | 85 |
| MIMAT0027079 | bdi-miR166g-5p | 6 | _...... | 1 | 85 |
| MIMAT0019929 | hsa-miR-4774-5p | 6 | _...... | 1 | 85 |
| MIMAT0019025 | hsa-miR-4490 | 6 | _...... | 1 | 85 |
| MIMAT0018845 | tca-miR-3876-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018701 | tca-miR-3834-3p | 8 | _...... | 3 | 85 |
| MIMAT0018568 | ame-miR-3789 | 7 | _...... | 2 | 85 |
| MIMAT0016739 | cin-miR-4140-3p | 1 | _...... | 6 | 85 |
| MIMAT0016703 | cin-miR-4113-5p | 6 | _...... | 1 | 85 |
| MIMAT0016570 | cin-miR-4040-3p | 3 | _...... | 8 | 85 |
| MIMAT0014794 | api-miR-3015c | 2 | _...... | 7 | 85 |
| MIMAT0013672 | bmo-miR-2781 | 2 | _...... | 7 | 85 |
| MIMAT0013614 | bmo-miR-2754 | 6 | _...... | 1 | 85 |
| MIMAT0011700 | ppc-miR-2265 | 2 | _...... | 7 | 85 |
| MIMAT0007493 | gga-miR-1625-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007309 | oan-miR-1421ak-5p | 6 | ......_ | 1 | 85 |
| MIMAT0005407 | cre-miR1157-5p | 8 | ......_ | 3 | 85 |
| MIMAT0005110 | ppt-miR1024b | 6 | _...... | 1 | 85 |
| MIMAT0005109 | ppt-miR1024a | 6 | _...... | 1 | 85 |
| MIMAT0004967 | cre-miR909.1 | 8 | ......_ | 3 | 85 |
| MIMAT0004321 | ath-miR869.2 | 6 | _...... | 1 | 85 |
| MIMAT0032012 | dre-miR-735-5p | 8 | ......_ | 3 | 85 |
| MIMAT0014961 | mmu-miR-344d-2-5p | 8 | _...... | 3 | 85 |
| MIMAT0001575 | hcmv-miR-UL22A-3p | 3 | _...... | 8 | 85 |
