| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gacggctc | 8 | ||
| MIMAT0033468 | str-miR-8379b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0032843 | cel-miR-8211-3p | 1 | _....... | 7 | 87 |
| MIMAT0015522 | bmo-miR-3335 | 8 | _....... | 2 | 87 |
| MIMAT0007358 | gma-miR171a | 8 | _....... | 2 | 87 |
| MIMAT0005224 | smo-miR171b | 8 | _....... | 2 | 87 |
| MIMAT0033101 | ppc-miR-8294-5p | 1 | .c...... | 8 | 87 |
| MIMAT0031851 | cpa-miR5211 | 8 | ......a. | 1 | 87 |
| MIMAT0037304 | cre-miR9897-3p | 3 | _......_ | 8 | 75 |
| MIMAT0037191 | ata-miR171a-3p | 7 | __...... | 2 | 75 |
| MIMAT0037101 | ata-miR171c-3p | 8 | __...... | 3 | 75 |
| MIMAT0036355 | gma-miR9735 | 2 | _......_ | 7 | 75 |
| MIMAT0035519 | bdi-miR171f | 7 | __...... | 2 | 75 |
| MIMAT0035482 | sly-miR171e | 8 | __...... | 3 | 75 |
| MIMAT0034797 | efu-miR-9209d | 7 | _......_ | 2 | 75 |
| MIMAT0034764 | eca-miR-9183 | 2 | __...... | 7 | 75 |
| MIMAT0033925 | atr-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0033780 | pxy-miR-8534-5p | 2 | ......__ | 7 | 75 |
| MIMAT0033687 | sma-miR-8483-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032962 | ppc-miR-8249-5p | 3 | __...... | 8 | 75 |
| MIMAT0032925 | ppc-miR-8235-3p | 6 | ......__ | 1 | 75 |
| MIMAT0031765 | hbv-miR-B3RC-3p | 1 | __...... | 6 | 75 |
| MIMAT0031467 | ppe-miR171d-3p | 7 | __...... | 2 | 75 |
| MIMAT0031311 | stu-miR479 | 7 | __...... | 2 | 75 |
| MIMAT0031302 | stu-miR171d-3p | 8 | __...... | 3 | 75 |
| MIMAT0031248 | stu-miR171b-3p | 8 | __...... | 3 | 75 |
| MIMAT0030832 | prd-miR-7964b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030828 | prd-miR-7964a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0030582 | prd-miR-7896-5p | 8 | __...... | 3 | 75 |
| MIMAT0030530 | prd-miR-36-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030495 | prd-miR-34-3p | 1 | _......_ | 6 | 75 |
| MIMAT0029824 | mmu-miR-7659-5p | 8 | __...... | 3 | 75 |
| MIMAT0029770 | cbn-miR-34 | 1 | _......_ | 6 | 75 |
| MIMAT0029318 | lja-miR171d-5p | 8 | __...... | 3 | 75 |
| MIMAT0029316 | lja-miR171c | 7 | __...... | 2 | 75 |
| MIMAT0029240 | mes-miR171d | 8 | __...... | 3 | 75 |
| MIMAT0029239 | mes-miR171c | 8 | __...... | 3 | 75 |
| MIMAT0029238 | mes-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0026123 | cme-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0026122 | cme-miR171d | 8 | __...... | 3 | 75 |
| MIMAT0026085 | cme-miR171i | 8 | __...... | 3 | 75 |
| MIMAT0025951 | mdm-miR171n | 8 | __...... | 3 | 75 |
| MIMAT0025950 | mdm-miR171m | 8 | __...... | 3 | 75 |
| MIMAT0025949 | mdm-miR171l | 8 | __...... | 3 | 75 |
| MIMAT0025948 | mdm-miR171k | 8 | __...... | 3 | 75 |
| MIMAT0025947 | mdm-miR171j | 8 | __...... | 3 | 75 |
| MIMAT0025946 | mdm-miR171i | 7 | __...... | 2 | 75 |
| MIMAT0025943 | mdm-miR171f | 8 | __...... | 3 | 75 |
| MIMAT0025939 | mdm-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0025938 | mdm-miR171a | 8 | __...... | 3 | 75 |
| MIMAT0027859 | mmu-miR-6978-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027384 | hsa-miR-6741-3p | 2 | __...... | 7 | 75 |
| MIMAT0025233 | ptc-miR6432 | 1 | __...... | 6 | 75 |
| MIMAT0027309 | ppe-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0027285 | ppe-miR171h | 8 | __...... | 3 | 75 |
| MIMAT0024857 | mmu-miR-6236 | 6 | ......__ | 1 | 75 |
| MIMAT0024793 | hbr-miR6173 | 6 | _......_ | 1 | 75 |
| MIMAT0024687 | nta-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0027224 | lus-miR171i | 8 | __...... | 3 | 75 |
| MIMAT0027219 | lus-miR171h | 8 | __...... | 3 | 75 |
| MIMAT0024243 | ggo-miR-337 | 3 | _......_ | 8 | 75 |
| MIMAT0024132 | ggo-miR-760 | 1 | __...... | 6 | 75 |
| MIMAT0023236 | gma-miR171t | 8 | __...... | 3 | 75 |
| MIMAT0023234 | gma-miR171s | 7 | __...... | 2 | 75 |
| MIMAT0023229 | gma-miR171r | 7 | __...... | 2 | 75 |
| MIMAT0023215 | gma-miR171q | 8 | __...... | 3 | 75 |
| MIMAT0023208 | gma-miR171p | 8 | __...... | 3 | 75 |
| MIMAT0023204 | gma-miR171o-3p | 8 | __...... | 3 | 75 |
| MIMAT0023202 | gma-miR171n | 8 | __...... | 3 | 75 |
| MIMAT0023200 | gma-miR171m | 8 | __...... | 3 | 75 |
| MIMAT0023132 | mtr-miR171g | 7 | __...... | 2 | 75 |
| MIMAT0023032 | tur-miR-5728-1-5p | 8 | _......_ | 3 | 75 |
| MIMAT0022513 | ssl-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0022512 | ssl-miR171a | 8 | __...... | 3 | 75 |
| MIMAT0021979 | aca-miR-497-3p | 8 | _......_ | 3 | 75 |
| MIMAT0022995 | gma-miR171k-3p | 8 | __...... | 3 | 75 |
| MIMAT0021469 | asu-miR-72-3p | 6 | _......_ | 1 | 75 |
| MIMAT0021438 | asu-miR-34-3p | 2 | _......_ | 7 | 75 |
| MIMAT0021366 | mtr-miR5295d | 2 | __...... | 7 | 75 |
| MIMAT0021365 | mtr-miR5295c | 2 | __...... | 7 | 75 |
| MIMAT0021364 | mtr-miR5295b | 2 | __...... | 7 | 75 |
| MIMAT0021363 | mtr-miR5295a | 2 | __...... | 7 | 75 |
| MIMAT0021269 | mtr-miR171h | 7 | __...... | 2 | 75 |
| MIMAT0022983 | gma-miR169i-5p | 7 | __...... | 2 | 75 |
| MIMAT0021057 | gma-miR171i-3p | 8 | __...... | 3 | 75 |
| MIMAT0019080 | hsa-miR-4537 | 7 | __...... | 2 | 75 |
| MIMAT0018456 | csi-miR171a | 8 | __...... | 3 | 75 |
| MIMAT0018455 | csi-miR171b | 7 | __...... | 2 | 75 |
| MIMAT0022972 | gma-miR171c-3p | 8 | __...... | 3 | 75 |
| MIMAT0018227 | tae-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0016609 | cin-miR-4060-3p | 6 | _......_ | 1 | 75 |
| MIMAT0016104 | ppy-miR-760 | 1 | __...... | 6 | 75 |
| MIMAT0015838 | ppy-miR-337-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017765 | esi-miR3461-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017632 | aly-miR845a-3p | 1 | __...... | 6 | 75 |
| MIMAT0017520 | aly-miR171c-3p | 8 | __...... | 3 | 75 |
| MIMAT0017518 | aly-miR171b-3p | 8 | __...... | 3 | 75 |
| MIMAT0014173 | rco-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0014172 | rco-miR171a | 8 | __...... | 3 | 75 |
| MIMAT0014082 | ctr-miR171 | 8 | __...... | 3 | 75 |
| MIMAT0015352 | zma-miR397a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0013134 | eca-miR-337-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012788 | mml-miR-760 | 1 | __...... | 6 | 75 |
| MIMAT0013625 | bmo-miR-745-5p | 1 | __...... | 6 | 75 |
| MIMAT0015303 | bmo-miR-306a-3p | 8 | __...... | 3 | 75 |
| MIMAT0012416 | dps-miR-2573-5p | 8 | __...... | 3 | 75 |
| MIMAT0012315 | dps-miR-2526-3p | 6 | ......__ | 1 | 75 |
| MIMAT0010170 | bol-miR171a | 8 | __...... | 3 | 75 |
| MIMAT0010164 | bra-miR171d | 8 | __...... | 3 | 75 |
| MIMAT0010163 | bra-miR171c | 8 | __...... | 3 | 75 |
| MIMAT0010162 | bra-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0010161 | bra-miR171a | 8 | __...... | 3 | 75 |
| MIMAT0022951 | bta-miR-760-3p | 1 | __...... | 6 | 75 |
| MIMAT0008319 | ptr-miR-760 | 1 | __...... | 6 | 75 |
| MIMAT0007925 | sly-miR171d | 8 | __...... | 3 | 75 |
| MIMAT0007923 | sly-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0006555 | vvi-miR171g | 8 | __...... | 3 | 75 |
| MIMAT0006275 | mml-miR-337-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007524 | gga-miR-1648-5p | 1 | __...... | 6 | 75 |
| MIMAT0007442 | gga-miR-1581 | 7 | __...... | 2 | 75 |
| MIMAT0007363 | gma-miR171b-3p | 7 | __...... | 2 | 75 |
| MIMAT0005996 | ptc-miR171j | 7 | __...... | 2 | 75 |
| MIMAT0005995 | ptc-miR171m | 7 | __...... | 2 | 75 |
| MIMAT0005994 | ptc-miR171l-3p | 7 | __...... | 2 | 75 |
| MIMAT0005696 | vvi-miR171f | 8 | __...... | 3 | 75 |
| MIMAT0005609 | bna-miR171e | 8 | __...... | 3 | 75 |
| MIMAT0005608 | bna-miR171d | 8 | __...... | 3 | 75 |
| MIMAT0005607 | bna-miR171c | 8 | __...... | 3 | 75 |
| MIMAT0005606 | bna-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0005605 | bna-miR171a | 8 | __...... | 3 | 75 |
| MIMAT0005337 | rno-miR-760-3p | 1 | __...... | 6 | 75 |
| MIMAT0005226 | smo-miR171d | 7 | __...... | 2 | 75 |
| MIMAT0005223 | smo-miR171a | 8 | __...... | 3 | 75 |
| MIMAT0004376 | ppt-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0004375 | ppt-miR171a | 7 | __...... | 2 | 75 |
| MIMAT0011113 | mtr-miR171f | 8 | __...... | 3 | 75 |
| MIMAT0004957 | hsa-miR-760 | 1 | __...... | 6 | 75 |
| MIMAT0004268 | ath-miR845a | 1 | __...... | 6 | 75 |
| MIMAT0003898 | mmu-miR-760-3p | 1 | __...... | 6 | 75 |
| MIMAT0001984 | ptc-miR171b | 8 | __...... | 3 | 75 |
| MIMAT0001983 | ptc-miR171a-3p | 8 | __...... | 3 | 75 |
| MIMAT0001756 | sbi-miR171f | 8 | __...... | 3 | 75 |
| MIMAT0001746 | zma-miR171h-3p | 8 | __...... | 3 | 75 |
| MIMAT0001745 | zma-miR171k-3p | 8 | __...... | 3 | 75 |
| MIMAT0001695 | zma-miR171f-3p | 8 | __...... | 3 | 75 |
| MIMAT0001466 | sbi-miR171e | 8 | __...... | 3 | 75 |
| MIMAT0001386 | zma-miR171b-3p | 8 | __...... | 3 | 75 |
| MIMAT0001077 | osa-miR171h | 8 | __...... | 3 | 75 |
| MIMAT0000921 | ath-miR171c-3p | 8 | __...... | 3 | 75 |
| MIMAT0000920 | ath-miR171b-3p | 8 | __...... | 3 | 75 |
| MIMAT0004695 | hsa-miR-337-5p | 3 | _......_ | 8 | 75 |
| MIMAT0015093 | cel-miR-34-3p | 1 | _......_ | 6 | 75 |
