| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gagagac | 7 | ||
| MIMAT0035678 | bra-miR9561-3p | 1 | ....... | 7 | 100 |
| MIMAT0035483 | sly-miR477-5p | 8 | ....... | 2 | 100 |
| MIMAT0027691 | hsa-miR-6895-3p | 8 | ....... | 2 | 100 |
| MIMAT0025650 | gga-miR-6571-3p | 2 | ....... | 8 | 100 |
| MIMAT0012223 | dps-miR-980-5p | 8 | ....... | 2 | 100 |
| MIMAT0036564 | tch-miR-185-5p | 3 | ......_ | 8 | 85 |
| MIMAT0036481 | tch-miR-6529 | 1 | ......_ | 6 | 85 |
| MIMAT0035386 | nve-miR-9427 | 1 | _...... | 6 | 85 |
| MIMAT0035073 | efu-miR-185 | 3 | ......_ | 8 | 85 |
| MIMAT0034805 | efu-miR-9214 | 6 | _...... | 1 | 85 |
| MIMAT0034060 | gra-miR8687 | 1 | _...... | 6 | 85 |
| MIMAT0033592 | sma-miR-281-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033280 | ppc-miR-8359-5p | 3 | ......_ | 8 | 85 |
| MIMAT0033136 | ppc-miR-8306-5p | 7 | _...... | 2 | 85 |
| MIMAT0033123 | ppc-miR-8364u-5p | 6 | ......_ | 1 | 85 |
| MIMAT0032818 | cel-miR-8202-3p | 1 | _...... | 6 | 85 |
| MIMAT0031840 | cpa-miR8143 | 1 | ......_ | 6 | 85 |
| MIMAT0031543 | ppe-miR6267c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029801 | mmu-miR-7649-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029365 | lja-miR7539 | 3 | ......_ | 8 | 85 |
| MIMAT0029329 | lja-miR7516-3p | 1 | _...... | 6 | 85 |
| MIMAT0029122 | hcmv-miR-UL59 | 8 | ......_ | 3 | 85 |
| MIMAT0028698 | mdo-miR-7344-5p | 8 | _...... | 3 | 85 |
| MIMAT0028410 | mmu-miR-7221-5p | 7 | _...... | 2 | 85 |
| MIMAT0028314 | mml-miR-6529-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028118 | hsa-miR-7110-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028118 | hsa-miR-7110-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027988 | mmu-miR-7042-5p | 2 | _...... | 7 | 85 |
| MIMAT0027853 | mmu-miR-6975-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027697 | mmu-miR-6898-3p | 8 | _...... | 3 | 85 |
| MIMAT0027693 | mmu-miR-6896-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027567 | hsa-miR-6833-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027537 | hsa-miR-6818-3p | 8 | _...... | 3 | 85 |
| MIMAT0027535 | hsa-miR-6817-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025722 | gga-miR-6626-5p | 3 | ......_ | 8 | 85 |
| MIMAT0025662 | gga-miR-6577-3p | 1 | _...... | 6 | 85 |
| MIMAT0025565 | bta-miR-6529a | 1 | ......_ | 6 | 85 |
| MIMAT0024722 | nta-miR477b | 6 | ......_ | 1 | 85 |
| MIMAT0024281 | ggo-miR-3615 | 6 | ......_ | 1 | 85 |
| MIMAT0024086 | ggo-miR-185 | 3 | ......_ | 8 | 85 |
| MIMAT0023811 | cgr-miR-185-5p | 3 | ......_ | 8 | 85 |
| MIMAT0023661 | ame-miR-6000b | 2 | _...... | 7 | 85 |
| MIMAT0023130 | mtr-miR5750 | 3 | ......_ | 8 | 85 |
| MIMAT0022460 | gma-miR5675 | 2 | _...... | 7 | 85 |
| MIMAT0021178 | mtr-miR5221 | 3 | ......_ | 8 | 85 |
| MIMAT0020614 | mmu-miR-3473c | 6 | ......_ | 1 | 85 |
| MIMAT0019920 | hsa-miR-4768-5p | 8 | ......_ | 3 | 85 |
| MIMAT0019704 | hsa-miR-4644 | 3 | ......_ | 8 | 85 |
| MIMAT0019673 | osa-miR3979-5p | 6 | ......_ | 1 | 85 |
| MIMAT0019673 | osa-miR3979-5p | 8 | ......_ | 3 | 85 |
| MIMAT0017994 | hsa-miR-3615 | 6 | ......_ | 1 | 85 |
| MIMAT0016858 | hsa-miR-4306 | 3 | ......_ | 8 | 85 |
| MIMAT0016036 | ppy-miR-593 | 7 | _...... | 2 | 85 |
| MIMAT0015781 | ppy-miR-185 | 3 | ......_ | 8 | 85 |
| MIMAT0015645 | mmu-miR-3473a | 3 | ......_ | 8 | 85 |
| MIMAT0017647 | aly-miR859-5p | 6 | ......_ | 1 | 85 |
| MIMAT0015444 | bmo-miR-3260 | 7 | _...... | 2 | 85 |
| MIMAT0014947 | mmu-miR-3108-5p | 6 | _...... | 1 | 85 |
| MIMAT0020950 | osa-miR1863b.2 | 1 | _...... | 6 | 85 |
| MIMAT0013585 | cte-miR-2716 | 1 | ......_ | 6 | 85 |
| MIMAT0009247 | bta-miR-185 | 3 | ......_ | 8 | 85 |
| MIMAT0008264 | ptr-miR-593 | 7 | _...... | 2 | 85 |
| MIMAT0008053 | ptr-miR-185 | 3 | ......_ | 8 | 85 |
| MIMAT0007759 | ssc-miR-185 | 3 | ......_ | 8 | 85 |
| MIMAT0006660 | cfa-miR-185 | 3 | ......_ | 8 | 85 |
| MIMAT0006453 | mml-miR-593 | 7 | _...... | 2 | 85 |
| MIMAT0006219 | mml-miR-185-5p | 3 | ......_ | 8 | 85 |
| MIMAT0006016 | hiv1-miR-TAR-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007215 | oan-miR-1406-3p | 8 | ......_ | 3 | 85 |
| MIMAT0006797 | oan-miR-1328 | 1 | ......_ | 6 | 85 |
| MIMAT0006797 | oan-miR-1328 | 3 | ......_ | 8 | 85 |
| MIMAT0005165 | ppt-miR1049 | 6 | ......_ | 1 | 85 |
| MIMAT0005122 | ppt-miR1029 | 6 | ......_ | 1 | 85 |
| MIMAT0005122 | ppt-miR1029 | 8 | ......_ | 3 | 85 |
| MIMAT0004847 | mmu-miR-882 | 3 | ......_ | 8 | 85 |
| MIMAT0004845 | mmu-miR-881-5p | 3 | ......_ | 8 | 85 |
| MIMAT0004303 | ath-miR859 | 6 | ......_ | 1 | 85 |
| MIMAT0012100 | sme-miR-12-3p | 7 | _...... | 2 | 85 |
| MIMAT0004802 | hsa-miR-593-3p | 7 | _...... | 2 | 85 |
| MIMAT0000862 | rno-miR-185-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000455 | hsa-miR-185-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000214 | mmu-miR-185-5p | 3 | ......_ | 8 | 85 |
