| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gaggagat | 8 | ||
| MIMAT0037005 | ssc-miR-9788-3p | 2 | ......._ | 8 | 87 |
| MIMAT0035410 | nve-miR-9449 | 8 | _....... | 2 | 87 |
| MIMAT0033671 | sma-miR-8475-5p | 8 | _....... | 2 | 87 |
| MIMAT0031425 | mmu-miR-8119 | 1 | ......._ | 7 | 87 |
| MIMAT0030170 | bdi-miR7722-5p | 7 | ......._ | 1 | 87 |
| MIMAT0027676 | hsa-miR-6888-5p | 2 | _....... | 8 | 87 |
| MIMAT0025648 | gga-miR-6570-3p | 2 | ......._ | 8 | 87 |
| MIMAT0021089 | osa-miR5144-3p | 7 | ......._ | 1 | 87 |
| MIMAT0020251 | egr-miR-4990 | 7 | ......._ | 1 | 87 |
| MIMAT0019948 | hsa-miR-4784 | 2 | ......._ | 8 | 87 |
| MIMAT0018194 | hsa-miR-3150b-3p | 2 | ......._ | 8 | 87 |
| MIMAT0016909 | hsa-miR-4279 | 8 | ......._ | 2 | 87 |
| MIMAT0016309 | sja-miR-3500 | 1 | _....... | 7 | 87 |
| MIMAT0016178 | ppy-miR-1253 | 2 | ......._ | 8 | 87 |
| MIMAT0017779 | esi-miR3453-5p | 8 | ......._ | 2 | 87 |
| MIMAT0012036 | bta-miR-2454-3p | 7 | ......._ | 1 | 87 |
| MIMAT0006952 | oan-miR-1355-3p | 7 | ......._ | 1 | 87 |
| MIMAT0005533 | mcmv-miR-m01-1 | 2 | ......._ | 8 | 87 |
| MIMAT0034686 | eca-miR-9135 | 8 | .t...... | 1 | 87 |
| MIMAT0033656 | sma-miR-8468-3p | 1 | .t...... | 8 | 87 |
| MIMAT0032995 | ppc-miR-8261-5p | 8 | .t...... | 1 | 87 |
| MIMAT0023492 | hco-miR-5982 | 8 | ......c. | 1 | 87 |
| MIMAT0021097 | osa-miR5149 | 1 | ......c. | 8 | 87 |
| MIMAT0016665 | cin-miR-4088-3p | 8 | .t...... | 1 | 87 |
| MIMAT0017381 | ssc-miR-339-3p | 8 | ......c. | 1 | 87 |
| MIMAT0037214 | ata-miR1432-5p | 3 | _......_ | 8 | 75 |
| MIMAT0037210 | ata-miR395c-5p | 8 | _......_ | 3 | 75 |
| MIMAT0037038 | ssc-miR-9820-5p | 1 | ......__ | 6 | 75 |
| MIMAT0036716 | oha-miR-139-3p | 2 | __...... | 7 | 75 |
| MIMAT0036243 | chi-miR-483 | 8 | ......__ | 3 | 75 |
| MIMAT0035981 | chi-miR-151-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035117 | efu-miR-9347 | 8 | ......__ | 3 | 75 |
| MIMAT0034979 | efu-miR-9306 | 6 | _......_ | 1 | 75 |
| MIMAT0034621 | eca-miR-9076 | 6 | _......_ | 1 | 75 |
| MIMAT0034485 | eca-miR-8955 | 3 | ......__ | 8 | 75 |
| MIMAT0034476 | eca-miR-8947 | 2 | ......__ | 7 | 75 |
| MIMAT0034319 | cfa-miR-8827 | 8 | ......__ | 3 | 75 |
| MIMAT0034227 | gra-miR7504m | 8 | _......_ | 3 | 75 |
| MIMAT0034226 | gra-miR7504l | 8 | _......_ | 3 | 75 |
| MIMAT0034225 | gra-miR7504k | 8 | _......_ | 3 | 75 |
| MIMAT0034095 | gra-miR8708 | 3 | ......__ | 8 | 75 |
| MIMAT0034068 | gra-miR7504f | 1 | _......_ | 6 | 75 |
| MIMAT0034067 | gra-miR7504e | 1 | _......_ | 6 | 75 |
| MIMAT0033891 | atr-miR8602 | 3 | _......_ | 8 | 75 |
| MIMAT0033404 | str-miR-47-5p | 2 | _......_ | 7 | 75 |
| MIMAT0033219 | ppc-miR-8336-3p | 2 | __...... | 7 | 75 |
| MIMAT0033207 | ppc-miR-8331-3p | 6 | __...... | 1 | 75 |
| MIMAT0033192 | ppc-miR-8324-5p | 3 | _......_ | 8 | 75 |
| MIMAT0033013 | ppc-miR-8264-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032994 | ppc-miR-8250d-3p | 6 | __...... | 1 | 75 |
| MIMAT0032988 | ppc-miR-8250a-2-3p | 6 | __...... | 1 | 75 |
| MIMAT0032965 | ppc-miR-8250a-3p | 6 | __...... | 1 | 75 |
| MIMAT0032939 | ppc-miR-8241-3p | 8 | __...... | 3 | 75 |
| MIMAT0032848 | ppc-miR-2251b-5p | 6 | __...... | 1 | 75 |
| MIMAT0032357 | ssa-miR-139-3p | 2 | __...... | 7 | 75 |
| MIMAT0031852 | cpa-miR8154 | 3 | ......__ | 8 | 75 |
| MIMAT0031685 | bbe-miR-4864-5p | 3 | __...... | 8 | 75 |
| MIMAT0031419 | mmu-miR-8113 | 2 | _......_ | 7 | 75 |
| MIMAT0031407 | mmu-miR-8103 | 6 | _......_ | 1 | 75 |
| MIMAT0030342 | hhi-miR-7795 | 1 | _......_ | 6 | 75 |
| MIMAT0030295 | bdi-miR7772-3p | 8 | __...... | 3 | 75 |
| MIMAT0030257 | bdi-miR7756-3p | 2 | __...... | 7 | 75 |
| MIMAT0029296 | mes-miR477g | 6 | __...... | 1 | 75 |
| MIMAT0029295 | mes-miR477f | 6 | __...... | 1 | 75 |
| MIMAT0029036 | gga-miR-7441-5p | 3 | ......__ | 8 | 75 |
| MIMAT0026332 | ccr-miR-7132 | 2 | ......__ | 7 | 75 |
| MIMAT0028078 | mmu-miR-7086-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028068 | mmu-miR-7081-5p | 2 | ......__ | 7 | 75 |
| MIMAT0028018 | mmu-miR-7057-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028004 | mmu-miR-7050-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027979 | mmu-miR-7037-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027928 | mmu-miR-7012-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027864 | mmu-miR-6981-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027855 | mmu-miR-6976-3p | 6 | __...... | 1 | 75 |
| MIMAT0027853 | mmu-miR-6975-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027739 | mmu-miR-6919-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027616 | hsa-miR-6858-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027591 | hsa-miR-6845-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027485 | hsa-miR-6792-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027461 | hsa-miR-6780a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027399 | hsa-miR-6749-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025816 | gga-miR-6706-5p | 1 | _......_ | 6 | 75 |
| MIMAT0025805 | gga-miR-6698-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025722 | gga-miR-6626-5p | 1 | _......_ | 6 | 75 |
| MIMAT0025717 | gga-miR-4732-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025715 | gga-miR-6619-5p | 1 | _......_ | 6 | 75 |
| MIMAT0025700 | gga-miR-6606-5p | 1 | ......__ | 6 | 75 |
| MIMAT0025673 | gga-miR-6583-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025275 | ptc-miR477d-5p | 6 | __...... | 1 | 75 |
| MIMAT0024832 | hvu-miR6204 | 1 | _......_ | 6 | 75 |
| MIMAT0024818 | hvu-miR6192 | 2 | _......_ | 7 | 75 |
| MIMAT0024107 | ggo-miR-151a | 3 | ......__ | 8 | 75 |
| MIMAT0024069 | ptr-miR-4428 | 3 | _......_ | 8 | 75 |
| MIMAT0023782 | cgr-miR-151-5p | 3 | ......__ | 8 | 75 |
| MIMAT0023353 | hco-miR-5902-3p | 3 | ......__ | 8 | 75 |
| MIMAT0023308 | osa-miR5833 | 8 | ......__ | 3 | 75 |
| MIMAT0022496 | hsa-miR-5703 | 1 | _......_ | 6 | 75 |
| MIMAT0022157 | osa-miR5523 | 2 | ......__ | 7 | 75 |
| MIMAT0022024 | aca-miR-5408a-5p | 8 | __...... | 3 | 75 |
| MIMAT0021763 | aca-miR-139-3p | 2 | __...... | 7 | 75 |
| MIMAT0021372 | mtr-miR5298d | 2 | __...... | 7 | 75 |
| MIMAT0021296 | mtr-miR5270b | 1 | ......__ | 6 | 75 |
| MIMAT0021295 | mtr-miR5270a | 1 | ......__ | 6 | 75 |
| MIMAT0021218 | mtr-miR5233 | 1 | ......__ | 6 | 75 |
| MIMAT0021178 | mtr-miR5221 | 1 | _......_ | 6 | 75 |
| MIMAT0021142 | mtr-miR5209 | 2 | ......__ | 7 | 75 |
| MIMAT0027089 | bdi-miR395e-5p | 8 | _......_ | 3 | 75 |
| MIMAT0021124 | hsa-miR-5193 | 8 | ......__ | 3 | 75 |
| MIMAT0021123 | hsa-miR-5192 | 1 | _......_ | 6 | 75 |
| MIMAT0027080 | bdi-miR5172-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020618 | mmu-miR-5110 | 2 | ......__ | 7 | 75 |
| MIMAT0020601 | hsa-miR-1273f | 1 | __...... | 6 | 75 |
| MIMAT0022982 | gma-miR2118b-5p | 1 | __...... | 6 | 75 |
| MIMAT0022981 | gma-miR2118a-5p | 1 | __...... | 6 | 75 |
| MIMAT0020097 | bfl-miR-4864-5p | 3 | __...... | 8 | 75 |
| MIMAT0020043 | sko-miR-4830b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0019921 | hsa-miR-4768-3p | 3 | _......_ | 8 | 75 |
| MIMAT0019778 | hsa-miR-4689 | 3 | ......__ | 8 | 75 |
| MIMAT0019768 | hsa-miR-4683 | 2 | __...... | 7 | 75 |
| MIMAT0018950 | hsa-miR-4434 | 1 | _......_ | 6 | 75 |
| MIMAT0018943 | hsa-miR-4428 | 3 | _......_ | 8 | 75 |
| MIMAT0018014 | vvi-miR3625-3p | 3 | __...... | 8 | 75 |
| MIMAT0016896 | hsa-miR-4268 | 8 | ......__ | 3 | 75 |
| MIMAT0017875 | rno-miR-3584-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016284 | sja-miR-3482-5p | 7 | ......__ | 2 | 75 |
| MIMAT0016105 | ppy-miR-765 | 3 | ......__ | 8 | 75 |
| MIMAT0015775 | ppy-miR-151a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017663 | aly-miR319d-5p | 1 | __...... | 6 | 75 |
| MIMAT0017433 | aly-miR319c-5p | 1 | __...... | 6 | 75 |
| MIMAT0014832 | mmu-miR-3063-5p | 2 | __...... | 7 | 75 |
| MIMAT0014626 | tgu-miR-139-3p | 2 | __...... | 7 | 75 |
| MIMAT0014422 | cqu-miR-1891 | 2 | ......__ | 7 | 75 |
| MIMAT0014263 | aae-miR-1891 | 2 | ......__ | 7 | 75 |
| MIMAT0015361 | zma-miR482-5p | 3 | __...... | 8 | 75 |
| MIMAT0013882 | ssc-miR-151-5p | 3 | ......__ | 8 | 75 |
| MIMAT0013004 | eca-miR-151-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012998 | eca-miR-1597 | 2 | ......__ | 7 | 75 |
| MIMAT0017370 | rno-miR-764-3p | 1 | ......__ | 6 | 75 |
| MIMAT0026936 | mdo-miR-139-3p | 2 | __...... | 7 | 75 |
| MIMAT0012730 | iltv-miR-I6-5p | 7 | _......_ | 2 | 75 |
| MIMAT0012583 | aqc-miR477f | 7 | _......_ | 2 | 75 |
| MIMAT0013251 | mtr-miR2586a | 2 | ......__ | 7 | 75 |
| MIMAT0009405 | mmu-miR-1941-5p | 3 | __...... | 8 | 75 |
| MIMAT0008320 | ptr-miR-765 | 3 | ......__ | 8 | 75 |
| MIMAT0007862 | aga-miR-1891 | 2 | ......__ | 7 | 75 |
| MIMAT0007787 | osa-miR1858b | 3 | ......__ | 8 | 75 |
| MIMAT0007786 | osa-miR1858a | 3 | ......__ | 8 | 75 |
| MIMAT0006615 | cfa-miR-151 | 3 | ......__ | 8 | 75 |
| MIMAT0006575 | vvi-miR477a | 6 | __...... | 1 | 75 |
| MIMAT0006537 | mml-miR-936 | 3 | _......_ | 8 | 75 |
| MIMAT0006509 | mml-miR-765 | 3 | ......__ | 8 | 75 |
| MIMAT0006491 | mml-miR-650d | 1 | _......_ | 6 | 75 |
| MIMAT0006212 | mml-miR-151-5p | 3 | ......__ | 8 | 75 |
| MIMAT0026783 | gga-miR-1759-3p | 8 | ......__ | 3 | 75 |
| MIMAT0007463 | gga-miR-1597-3p | 2 | ......__ | 7 | 75 |
| MIMAT0007460 | gga-miR-1596-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007424 | gga-miR-1564-3p | 6 | ......__ | 1 | 75 |
| MIMAT0005924 | hsa-miR-1270 | 3 | __...... | 8 | 75 |
| MIMAT0005387 | cre-miR1148.2 | 2 | __...... | 7 | 75 |
| MIMAT0004847 | mmu-miR-882 | 1 | _......_ | 6 | 75 |
| MIMAT0003945 | hsa-miR-765 | 3 | ......__ | 8 | 75 |
| MIMAT0003523 | bta-miR-151-5p | 3 | ......__ | 8 | 75 |
| MIMAT0010214 | hsa-miR-151b | 3 | ......__ | 8 | 75 |
| MIMAT0003289 | hsa-miR-620 | 3 | __...... | 8 | 75 |
| MIMAT0003121 | rno-miR-483-3p | 8 | ......__ | 3 | 75 |
| MIMAT0003115 | rno-miR-207 | 8 | _......_ | 3 | 75 |
| MIMAT0002075 | ptc-miR477b | 6 | __...... | 1 | 75 |
| MIMAT0002074 | ptc-miR477a-5p | 6 | __...... | 1 | 75 |
| MIMAT0015166 | zma-miR395a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0001567 | mghv-miR-M1-4-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004697 | hsa-miR-151a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0000613 | rno-miR-151-5p | 3 | ......__ | 8 | 75 |
| MIMAT0004536 | mmu-miR-151-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020795 | dme-miR-13a-5p | 6 | ......__ | 1 | 75 |
