| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gatcttca | 8 | ||
| MIMAT0031768 | hbv-miR-B8-3p | 1 | ........ | 8 | 100 |
| MIMAT0013761 | bmo-miR-2842 | 8 | ........ | 1 | 100 |
| MIMAT0030223 | bdi-miR7741-3p.1 | 2 | ......._ | 8 | 87 |
| MIMAT0024830 | hvu-miR6202 | 7 | _....... | 1 | 87 |
| MIMAT0024759 | nta-miR6156 | 8 | _....... | 2 | 87 |
| MIMAT0021617 | gma-miR5376 | 7 | _....... | 1 | 87 |
| MIMAT0016657 | cin-miR-4084-5p | 2 | ......._ | 8 | 87 |
| MIMAT0016375 | gga-miR-3526 | 8 | _....... | 2 | 87 |
| MIMAT0015563 | bmo-miR-3374-5p | 7 | _....... | 1 | 87 |
| MIMAT0015215 | kshv-miR-K12-2-3p | 1 | ......._ | 7 | 87 |
| MIMAT0035324 | gsa-miR-184c-5p | 1 | ......t. | 8 | 87 |
| MIMAT0034438 | eca-miR-8910 | 8 | .t...... | 1 | 87 |
| MIMAT0033209 | ppc-miR-8332-3p | 8 | .g...... | 1 | 87 |
| MIMAT0025808 | gga-miR-6699-5p | 8 | .g...... | 1 | 87 |
| MIMAT0016639 | cin-miR-4075-3p | 8 | ......t. | 1 | 87 |
| MIMAT0004012 | sme-miR-281-5p | 8 | .c...... | 1 | 87 |
| MIMAT0034810 | efu-miR-9218 | 8 | __...... | 3 | 75 |
| MIMAT0033954 | esi-miR8619 | 8 | ......__ | 3 | 75 |
| MIMAT0033284 | ppc-miR-8364t-5p | 1 | __...... | 6 | 75 |
| MIMAT0033270 | ppc-miR-8364s-5p | 1 | __...... | 6 | 75 |
| MIMAT0033262 | ppc-miR-8364r-5p | 1 | __...... | 6 | 75 |
| MIMAT0033260 | ppc-miR-8364e-5p | 1 | __...... | 6 | 75 |
| MIMAT0033236 | ppc-miR-8345-5p | 1 | __...... | 6 | 75 |
| MIMAT0033216 | ppc-miR-8364i-5p | 1 | __...... | 6 | 75 |
| MIMAT0033193 | ppc-miR-8324-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033188 | ppc-miR-8364m-5p | 1 | __...... | 6 | 75 |
| MIMAT0033176 | ppc-miR-8364a-5p | 1 | __...... | 6 | 75 |
| MIMAT0033161 | ppc-miR-8364w-5p | 1 | __...... | 6 | 75 |
| MIMAT0033151 | ppc-miR-8310-3p | 2 | _......_ | 7 | 75 |
| MIMAT0033119 | ppc-miR-8364g-5p | 1 | __...... | 6 | 75 |
| MIMAT0033109 | ppc-miR-8364f-5p | 1 | __...... | 6 | 75 |
| MIMAT0033081 | ppc-miR-8364b-5p | 1 | __...... | 6 | 75 |
| MIMAT0033045 | ppc-miR-8364n-5p | 1 | __...... | 6 | 75 |
| MIMAT0033030 | ppc-miR-8364c-5p | 1 | __...... | 6 | 75 |
| MIMAT0033026 | ppc-miR-8364j-5p | 1 | __...... | 6 | 75 |
| MIMAT0031378 | osa-miR6249b | 8 | __...... | 3 | 75 |
| MIMAT0031375 | osa-miR1861o | 2 | ......__ | 7 | 75 |
| MIMAT0031201 | stu-miR8024a-5p | 7 | __...... | 2 | 75 |
| MIMAT0030738 | prd-miR-7940a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030587 | prd-miR-7897-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030384 | ptc-miR7825 | 7 | __...... | 2 | 75 |
| MIMAT0030373 | ptc-miR7815 | 2 | __...... | 7 | 75 |
| MIMAT0032249 | rgl-miR7806 | 8 | _......_ | 3 | 75 |
| MIMAT0030242 | bdi-miR7751-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028951 | oan-miR-7404-3p | 7 | __...... | 2 | 75 |
| MIMAT0028567 | mdo-miR-7291-3p | 1 | __...... | 6 | 75 |
| MIMAT0028510 | mdo-miR-7270-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028327 | mml-miR-7186-3p | 1 | __...... | 6 | 75 |
| MIMAT0028233 | hsa-miR-7161-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026068 | mdm-miR169f | 6 | __...... | 1 | 75 |
| MIMAT0026067 | mdm-miR169e | 6 | __...... | 1 | 75 |
| MIMAT0028129 | mmu-miR-7116-5p | 6 | __...... | 1 | 75 |
| MIMAT0028094 | mmu-miR-7094-1-5p | 8 | __...... | 3 | 75 |
| MIMAT0028041 | mmu-miR-6769b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0027930 | mmu-miR-7013-5p | 8 | __...... | 3 | 75 |
| MIMAT0027409 | hsa-miR-6754-3p | 1 | __...... | 6 | 75 |
| MIMAT0025783 | gga-miR-6679-5p | 8 | _......_ | 3 | 75 |
| MIMAT0025661 | gga-miR-6577-5p | 2 | _......_ | 7 | 75 |
| MIMAT0025487 | hsa-miR-6515-3p | 3 | __...... | 8 | 75 |
| MIMAT0024871 | osa-miR6249a | 8 | __...... | 3 | 75 |
| MIMAT0027113 | mml-miR-676-5p | 2 | __...... | 7 | 75 |
| MIMAT0023565 | tca-miR-6012-5p | 3 | ......__ | 8 | 75 |
| MIMAT0023525 | ath-miR5999 | 1 | __...... | 6 | 75 |
| MIMAT0023005 | ath-miR5654-3p | 8 | _......_ | 3 | 75 |
| MIMAT0022011 | aca-miR-5401 | 3 | _......_ | 8 | 75 |
| MIMAT0021679 | sbi-miR5381 | 6 | ......__ | 1 | 75 |
| MIMAT0021359 | mtr-miR5293 | 8 | __...... | 3 | 75 |
| MIMAT0021186 | mtr-miR5227 | 6 | __...... | 1 | 75 |
| MIMAT0019812 | hsa-miR-4709-3p | 7 | __...... | 2 | 75 |
| MIMAT0019794 | hsa-miR-4699-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019709 | hsa-miR-4647 | 6 | _......_ | 1 | 75 |
| MIMAT0018941 | hsa-miR-4426 | 6 | _......_ | 1 | 75 |
| MIMAT0018203 | hsa-miR-676-5p | 1 | __...... | 6 | 75 |
| MIMAT0018535 | ame-miR-3762 | 6 | ......__ | 1 | 75 |
| MIMAT0016766 | cin-miR-4160-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017809 | rno-miR-3551-5p | 1 | __...... | 6 | 75 |
| MIMAT0017680 | aly-miR163-3p.1 | 6 | __...... | 1 | 75 |
| MIMAT0017620 | aly-miR835-3p | 6 | __...... | 1 | 75 |
| MIMAT0015435 | bmo-miR-3252 | 6 | __...... | 1 | 75 |
| MIMAT0015030 | hsa-miR-3156-5p | 7 | ......__ | 2 | 75 |
| MIMAT0014666 | hma-miR-3002 | 8 | _......_ | 3 | 75 |
| MIMAT0014310 | aae-miR-263b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0014142 | ath-miR2938 | 1 | ......__ | 6 | 75 |
| MIMAT0017382 | ssc-miR-676-5p | 2 | __...... | 7 | 75 |
| MIMAT0012729 | iltv-miR-I5-3p | 6 | __...... | 1 | 75 |
| MIMAT0013737 | bmo-miR-2826 | 8 | ......__ | 3 | 75 |
| MIMAT0013576 | cte-miR-2708 | 6 | _......_ | 1 | 75 |
| MIMAT0013573 | cte-miR-2706 | 6 | _......_ | 1 | 75 |
| MIMAT0011993 | bta-miR-2424 | 2 | ......__ | 7 | 75 |
| MIMAT0011564 | crm-miR-48-3p | 3 | _......_ | 8 | 75 |
| MIMAT0011421 | sme-miR-2200-5p | 6 | __...... | 1 | 75 |
| MIMAT0012132 | sme-miR-61b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0011179 | osa-miR2120 | 7 | ......__ | 2 | 75 |
| MIMAT0010051 | osa-miR2093-3p | 3 | _......_ | 8 | 75 |
| MIMAT0009929 | cfa-miR-300 | 7 | __...... | 2 | 75 |
| MIMAT0032075 | dvi-miR-2b-5p | 2 | __...... | 7 | 75 |
| MIMAT0032046 | dvi-miR-13a-5p | 2 | __...... | 7 | 75 |
| MIMAT0007809 | osa-miR1861n | 2 | ......__ | 7 | 75 |
| MIMAT0007807 | osa-miR1861l | 2 | ......__ | 7 | 75 |
| MIMAT0007804 | osa-miR1861i | 2 | ......__ | 7 | 75 |
| MIMAT0007801 | osa-miR1861f | 2 | ......__ | 7 | 75 |
| MIMAT0007798 | osa-miR1861c | 2 | ......__ | 7 | 75 |
| MIMAT0007797 | osa-miR1861b | 2 | ......__ | 7 | 75 |
| MIMAT0007796 | osa-miR1861a | 2 | ......__ | 7 | 75 |
| MIMAT0006762 | cfa-miR-676 | 2 | __...... | 7 | 75 |
| MIMAT0006559 | vvi-miR395n | 7 | __...... | 2 | 75 |
| MIMAT0006070 | csa-miR-1497 | 7 | __...... | 2 | 75 |
| MIMAT0006068 | cin-miR-1497-3p | 7 | __...... | 2 | 75 |
| MIMAT0006057 | odi-miR-1497h | 7 | __...... | 2 | 75 |
| MIMAT0006056 | odi-miR-1497g | 7 | __...... | 2 | 75 |
| MIMAT0006055 | odi-miR-1497f | 7 | __...... | 2 | 75 |
| MIMAT0006054 | odi-miR-1497e | 7 | __...... | 2 | 75 |
| MIMAT0006053 | odi-miR-1497d | 7 | __...... | 2 | 75 |
| MIMAT0006052 | odi-miR-1497c | 7 | __...... | 2 | 75 |
| MIMAT0006051 | odi-miR-1497b | 7 | __...... | 2 | 75 |
| MIMAT0006050 | odi-miR-1497a | 7 | __...... | 2 | 75 |
| MIMAT0005174 | ppt-miR1056 | 3 | ......__ | 8 | 75 |
| MIMAT0005076 | ppt-miR902f-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005523 | cel-miR-1022-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004476 | mdv2-miR-M29-5p | 1 | __...... | 6 | 75 |
| MIMAT0004989 | pta-miR156b | 8 | _......_ | 3 | 75 |
| MIMAT0004988 | pta-miR156a | 8 | _......_ | 3 | 75 |
| MIMAT0004272 | ath-miR850 | 7 | ......__ | 2 | 75 |
| MIMAT0026695 | mdo-miR-141-5p | 1 | _......_ | 6 | 75 |
| MIMAT0001322 | ath-miR414 | 3 | _......_ | 8 | 75 |
| MIMAT0004743 | rno-miR-300-5p | 7 | __...... | 2 | 75 |
| MIMAT0004598 | hsa-miR-141-5p | 2 | _......_ | 7 | 75 |
| MIMAT0004578 | mmu-miR-300-5p | 7 | __...... | 2 | 75 |
| MIMAT0000184 | ath-miR163 | 7 | __...... | 2 | 75 |
| MIMAT0004533 | mmu-miR-141-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020783 | dme-miR-2b-2-5p | 2 | __...... | 7 | 75 |
| MIMAT0020782 | dme-miR-2b-1-5p | 2 | __...... | 7 | 75 |
