| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcgccac | 7 | ||
| MIMAT0033206 | ppc-miR-8331-5p | 2 | ....... | 8 | 100 |
| MIMAT0025539 | bta-miR-6521 | 7 | ....... | 1 | 100 |
| MIMAT0015217 | kshv-miR-K12-7-5p | 2 | ....... | 8 | 100 |
| MIMAT0036576 | tch-miR-652-3p | 8 | ......_ | 3 | 85 |
| MIMAT0036211 | chi-miR-410-5p | 1 | _...... | 6 | 85 |
| MIMAT0033578 | sma-miR-8437-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028574 | mdo-miR-7295-5p | 3 | _...... | 8 | 85 |
| MIMAT0027985 | mmu-miR-7040-3p | 1 | _...... | 6 | 85 |
| MIMAT0027477 | hsa-miR-6788-3p | 3 | _...... | 8 | 85 |
| MIMAT0025141 | mmu-miR-6392-5p | 8 | ......_ | 3 | 85 |
| MIMAT0024578 | bta-miR-652 | 8 | ......_ | 3 | 85 |
| MIMAT0024153 | ggo-miR-652 | 8 | ......_ | 3 | 85 |
| MIMAT0023992 | cgr-miR-652-3p | 8 | ......_ | 3 | 85 |
| MIMAT0019642 | pma-miR-4608 | 8 | _...... | 3 | 85 |
| MIMAT0019458 | pma-miR-132-5p | 8 | _...... | 3 | 85 |
| MIMAT0019333 | oar-miR-410-5p | 1 | _...... | 6 | 85 |
| MIMAT0018337 | gma-miR4412-3p | 7 | _...... | 2 | 85 |
| MIMAT0018873 | tca-miR-3887-3p | 6 | ......_ | 1 | 85 |
| MIMAT0018822 | tca-miR-989-5p | 1 | _...... | 6 | 85 |
| MIMAT0018765 | tca-miR-3854-3p | 8 | _...... | 3 | 85 |
| MIMAT0018144 | pab-miR3711 | 6 | ......_ | 1 | 85 |
| MIMAT0016085 | ppy-miR-652 | 8 | ......_ | 3 | 85 |
| MIMAT0014695 | hsv1-miR-H17 | 6 | ......_ | 1 | 85 |
| MIMAT0013240 | eca-miR-652 | 8 | ......_ | 3 | 85 |
| MIMAT0013053 | eca-miR-675 | 6 | ......_ | 1 | 85 |
| MIMAT0013589 | lgi-miR-2722 | 6 | ......_ | 1 | 85 |
| MIMAT0011254 | sme-miR-2160-5p | 6 | ......_ | 1 | 85 |
| MIMAT0008302 | ptr-miR-652 | 8 | ......_ | 3 | 85 |
| MIMAT0006743 | cfa-miR-652 | 8 | ......_ | 3 | 85 |
| MIMAT0006493 | mml-miR-652 | 8 | ......_ | 3 | 85 |
| MIMAT0007440 | gga-miR-1579 | 7 | _...... | 2 | 85 |
| MIMAT0005740 | age-miR-506 | 8 | ......_ | 3 | 85 |
| MIMAT0005342 | rno-miR-652-3p | 8 | ......_ | 3 | 85 |
| MIMAT0003711 | mmu-miR-652-3p | 8 | ......_ | 3 | 85 |
| MIMAT0003322 | hsa-miR-652-3p | 8 | ......_ | 3 | 85 |
| MIMAT0017213 | rno-miR-541-3p | 7 | _...... | 2 | 85 |
