| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcggagg | 7 | ||
| MIMAT0037042 | ssc-miR-9824-5p | 2 | ....... | 8 | 100 |
| MIMAT0025566 | bta-miR-6530 | 2 | ....... | 8 | 100 |
| MIMAT0016091 | ppy-miR-658 | 2 | ....... | 8 | 100 |
| MIMAT0012714 | hvt-miR-H4-5p | 2 | ....... | 8 | 100 |
| MIMAT0009362 | bta-miR-658 | 2 | ....... | 8 | 100 |
| MIMAT0008307 | ptr-miR-658 | 2 | ....... | 8 | 100 |
| MIMAT0003336 | hsa-miR-658 | 2 | ....... | 8 | 100 |
| MIMAT0036099 | chi-miR-25-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035753 | bfv-miR-BF1-5p | 3 | _...... | 8 | 85 |
| MIMAT0035538 | bdi-miR5174f | 6 | _...... | 1 | 85 |
| MIMAT0034456 | eca-miR-8928 | 6 | ......_ | 1 | 85 |
| MIMAT0032562 | ssa-miR-25-3-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032560 | ssa-miR-25-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030742 | prd-miR-7941-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030421 | hsa-miR-7846-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030107 | bdi-miR5181c-5p | 6 | _...... | 1 | 85 |
| MIMAT0030105 | bdi-miR5174d-5p | 8 | _...... | 3 | 85 |
| MIMAT0030103 | bdi-miR5174c-5p | 8 | _...... | 3 | 85 |
| MIMAT0029854 | mmu-miR-3569-5p | 2 | _...... | 7 | 85 |
| MIMAT0028185 | dev-miR-D12-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025828 | gga-miR-6557-5p | 2 | _...... | 7 | 85 |
| MIMAT0023869 | cgr-miR-25-5p | 3 | ......_ | 8 | 85 |
| MIMAT0023116 | hsa-miR-5739 | 1 | ......_ | 6 | 85 |
| MIMAT0022108 | pti-miR5475 | 2 | _...... | 7 | 85 |
| MIMAT0017982 | hsa-miR-3605-3p | 6 | _...... | 1 | 85 |
| MIMAT0016672 | cin-miR-4093-5p | 6 | ......_ | 1 | 85 |
| MIMAT0017775 | esi-miR3459-5p | 3 | _...... | 8 | 85 |
| MIMAT0015576 | bmo-miR-3382-3p | 8 | _...... | 3 | 85 |
| MIMAT0014486 | tgu-miR-2976 | 1 | ......_ | 6 | 85 |
| MIMAT0015376 | hsv2-miR-H9-5p | 3 | _...... | 8 | 85 |
| MIMAT0013966 | bhv1-miR-B5 | 3 | _...... | 8 | 85 |
| MIMAT0010033 | mtr-miR1510a-3p | 1 | _...... | 6 | 85 |
| MIMAT0007348 | hsa-miR-1470 | 8 | _...... | 3 | 85 |
| MIMAT0007209 | oan-miR-1402 | 1 | ......_ | 6 | 85 |
| MIMAT0005365 | tae-miR1130a | 6 | _...... | 1 | 85 |
| MIMAT0004000 | sme-miR-184-3p | 3 | _...... | 8 | 85 |
| MIMAT0031946 | dre-miR-25-5p | 3 | ......_ | 8 | 85 |
| MIMAT0026552 | hcmv-miR-UL112-5p | 6 | _...... | 1 | 85 |
| MIMAT0004713 | rno-miR-25-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017049 | mmu-miR-25-5p | 3 | ......_ | 8 | 85 |
| MIMAT0004498 | hsa-miR-25-5p | 3 | ......_ | 8 | 85 |
