| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gcggtct | 7 | ||
| MIMAT0032960 | ppc-miR-8248-5p | 2 | ....... | 8 | 100 |
| MIMAT0019581 | pma-miR-4549 | 8 | ....... | 2 | 100 |
| MIMAT0001582 | hcmv-miR-US25-2-5p | 2 | ....... | 8 | 100 |
| MIMAT0036743 | oha-miR-15b-3p | 7 | _...... | 2 | 85 |
| MIMAT0033856 | atr-miR8573 | 2 | _...... | 7 | 85 |
| MIMAT0030513 | prd-miR-7878-3p | 2 | _...... | 7 | 85 |
| MIMAT0030263 | bdi-miR7758-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028191 | dev-miR-D17-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027695 | mmu-miR-6897-3p | 1 | _...... | 6 | 85 |
| MIMAT0026461 | hhv6b-miR-Ro6-3-3p | 6 | _...... | 1 | 85 |
| MIMAT0021791 | aca-miR-15b-3p | 7 | _...... | 2 | 85 |
| MIMAT0021030 | hsa-miR-548ao-3p | 8 | _...... | 3 | 85 |
| MIMAT0019658 | pma-miR-4624 | 3 | ......_ | 8 | 85 |
| MIMAT0018631 | tca-miR-2765-3p | 3 | ......_ | 8 | 85 |
| MIMAT0016610 | cin-miR-4061-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017774 | esi-miR3467-3p | 3 | _...... | 8 | 85 |
| MIMAT0017616 | aly-miR833-3p | 7 | _...... | 2 | 85 |
| MIMAT0014783 | api-miR-3017b | 1 | _...... | 6 | 85 |
| MIMAT0014752 | api-miR-3017a | 1 | _...... | 6 | 85 |
| MIMAT0011490 | cbr-miR-64b | 8 | ......_ | 3 | 85 |
| MIMAT0032093 | dvi-miR-100-3p | 8 | _...... | 3 | 85 |
| MIMAT0007808 | osa-miR1861m | 1 | _...... | 6 | 85 |
| MIMAT0007806 | osa-miR1861k | 1 | _...... | 6 | 85 |
| MIMAT0007805 | osa-miR1861j | 1 | _...... | 6 | 85 |
| MIMAT0007803 | osa-miR1861h | 1 | _...... | 6 | 85 |
| MIMAT0007800 | osa-miR1861e | 1 | _...... | 6 | 85 |
| MIMAT0005560 | mcmv-miR-m108-2-5p.1 | 1 | ......_ | 6 | 85 |
| MIMAT0004253 | ath-miR833a-3p | 7 | _...... | 2 | 85 |
| MIMAT0002194 | kshv-miR-K12-3-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026431 | sbi-miR169d-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020818 | dme-miR-100-3p | 8 | _...... | 3 | 85 |
