| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gctcgcgt | 8 | ||
| MIMAT0035419 | nve-miR-9458 | 8 | ........ | 1 | 100 |
| MIMAT0026391 | sbi-miR5564c-3p | 8 | ........ | 1 | 100 |
| MIMAT0019606 | pma-miR-4573 | 1 | ........ | 8 | 100 |
| MIMAT0033554 | sma-miR-8425-5p | 8 | _....... | 2 | 87 |
| MIMAT0005556 | mcmv-miR-m107-1-3p | 2 | ......._ | 8 | 87 |
| MIMAT0020574 | osa-miR5077 | 1 | .t...... | 8 | 87 |
| MIMAT0019597 | pma-miR-4565 | 8 | ......a. | 1 | 87 |
| MIMAT0005490 | dme-miR-974-5p | 8 | ......t. | 1 | 87 |
| MIMAT0015208 | zma-miR156k-3p | 1 | ......t. | 8 | 87 |
| MIMAT0037297 | ame-miR-9892 | 8 | __...... | 3 | 75 |
| MIMAT0036981 | tae-miR531 | 2 | ......__ | 7 | 75 |
| MIMAT0035768 | tae-miR9660-5p | 8 | ......__ | 3 | 75 |
| MIMAT0035645 | dvi-miR-974-2-5p | 8 | ......__ | 3 | 75 |
| MIMAT0035644 | dvi-miR-974-1-5p | 8 | ......__ | 3 | 75 |
| MIMAT0035358 | gsa-miR-9405-5p | 1 | __...... | 6 | 75 |
| MIMAT0035349 | gsa-miR-9394b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0034653 | eca-miR-9106 | 8 | __...... | 3 | 75 |
| MIMAT0032982 | ppc-miR-8257-5p | 2 | __...... | 7 | 75 |
| MIMAT0031691 | bbe-miR-4867-3p | 7 | ......__ | 2 | 75 |
| MIMAT0031405 | mmu-miR-8101 | 7 | ......__ | 2 | 75 |
| MIMAT0028809 | mdo-miR-7376-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025260 | ptc-miR6424 | 2 | ......__ | 7 | 75 |
| MIMAT0022435 | ath-miR5642b | 2 | _......_ | 7 | 75 |
| MIMAT0022403 | ath-miR5642a | 2 | _......_ | 7 | 75 |
| MIMAT0022057 | aca-miR-5436-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021523 | asu-miR-67-5p | 2 | ......__ | 7 | 75 |
| MIMAT0020103 | bfl-miR-4867 | 7 | ......__ | 2 | 75 |
| MIMAT0018260 | gma-miR4364a | 6 | _......_ | 1 | 75 |
| MIMAT0016757 | cin-miR-4153-3p | 2 | __...... | 7 | 75 |
| MIMAT0016529 | cin-miR-4018a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015612 | bmo-miR-3406-3p | 1 | __...... | 6 | 75 |
| MIMAT0014131 | api-miR-1923 | 3 | __...... | 8 | 75 |
| MIMAT0013583 | cte-miR-2714 | 7 | ......__ | 2 | 75 |
| MIMAT0005364 | tae-miR1129 | 8 | ......__ | 3 | 75 |
| MIMAT0026579 | mml-miR-99a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0022850 | osa-miR156j-3p | 1 | ......__ | 6 | 75 |
