| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gctggtt | 7 | ||
| MIMAT0033378 | str-miR-7880q-5p | 2 | ....... | 8 | 100 |
| MIMAT0032914 | ppc-miR-133-5p | 1 | ....... | 7 | 100 |
| MIMAT0031047 | mdo-miR-29b-2-5p | 1 | ....... | 7 | 100 |
| MIMAT0024624 | mml-miR-6131 | 2 | ....... | 8 | 100 |
| MIMAT0023885 | cgr-miR-29b-5p | 1 | ....... | 7 | 100 |
| MIMAT0009579 | lgi-miR-133-5p | 2 | ....... | 8 | 100 |
| MIMAT0019116 | tca-miR-133-5p | 2 | ....... | 8 | 100 |
| MIMAT0008291 | ptr-miR-634 | 7 | ....... | 1 | 100 |
| MIMAT0031079 | mml-miR-29b-2-5p | 2 | ....... | 8 | 100 |
| MIMAT0026803 | mml-miR-29b-1-5p | 2 | ....... | 8 | 100 |
| MIMAT0007593 | gga-miR-1701 | 2 | ....... | 8 | 100 |
| MIMAT0026703 | mdo-miR-29b-1-5p | 1 | ....... | 7 | 100 |
| MIMAT0003304 | hsa-miR-634 | 7 | ....... | 1 | 100 |
| MIMAT0031072 | gga-miR-29b-2-5p | 2 | ....... | 8 | 100 |
| MIMAT0026488 | gga-miR-29b-1-5p | 2 | ....... | 8 | 100 |
| MIMAT0020806 | dme-miR-133-5p | 2 | ....... | 8 | 100 |
| MIMAT0004523 | mmu-miR-29b-1-5p | 1 | ....... | 7 | 100 |
| MIMAT0004514 | hsa-miR-29b-1-5p | 1 | ....... | 7 | 100 |
| MIMAT0020303 | cel-miR-35-5p | 2 | ....... | 8 | 100 |
| MIMAT0036926 | oha-miR-449a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0036880 | oha-miR-29b-2-5p | 1 | _...... | 6 | 85 |
| MIMAT0036878 | oha-miR-29b-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0036703 | oha-miR-133a-3-5p | 1 | ......_ | 6 | 85 |
| MIMAT0036701 | oha-miR-133b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0036114 | chi-miR-29b-5p | 1 | _...... | 6 | 85 |
| MIMAT0035505 | bdi-miR9496 | 1 | _...... | 6 | 85 |
| MIMAT0034772 | efu-miR-9192 | 2 | _...... | 7 | 85 |
| MIMAT0034654 | eca-miR-7035 | 3 | _...... | 8 | 85 |
| MIMAT0034478 | eca-miR-8949 | 7 | _...... | 2 | 85 |
| MIMAT0034392 | cfa-miR-8888 | 3 | _...... | 8 | 85 |
| MIMAT0034277 | pra-miR8788b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0034275 | pra-miR8788a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0034269 | pin-miR8788-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033093 | ppc-miR-8290-5p | 2 | _...... | 7 | 85 |
| MIMAT0032583 | ssa-miR-29a-5p | 1 | _...... | 6 | 85 |
| MIMAT0032339 | ssa-miR-133b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0031664 | bbe-miR-29b-5p | 2 | _...... | 7 | 85 |
| MIMAT0029653 | cbn-miR-7597 | 7 | _...... | 2 | 85 |
| MIMAT0029612 | crm-miR-7597 | 7 | _...... | 2 | 85 |
| MIMAT0029582 | cbr-miR-7581 | 7 | _...... | 2 | 85 |
| MIMAT0029492 | ipu-miR-29c | 1 | _...... | 6 | 85 |
| MIMAT0027599 | hsa-miR-6849-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025432 | pol-miR-133-5p | 1 | ......_ | 6 | 85 |
| MIMAT0025081 | mmu-miR-6338 | 1 | _...... | 6 | 85 |
| MIMAT0024802 | hvu-miR6179 | 6 | _...... | 1 | 85 |
| MIMAT0023653 | bna-miR6033 | 8 | _...... | 3 | 85 |
| MIMAT0023187 | gma-miR5782 | 3 | ......_ | 8 | 85 |
| MIMAT0022831 | sha-miR-363 | 3 | ......_ | 8 | 85 |
| MIMAT0021513 | asu-miR-279b-5p | 2 | _...... | 7 | 85 |
| MIMAT0021497 | asu-miR-133-5p | 2 | _...... | 7 | 85 |
| MIMAT0021204 | mtr-miR2592bg | 3 | ......_ | 8 | 85 |
| MIMAT0021203 | mtr-miR2592bf | 3 | ......_ | 8 | 85 |
| MIMAT0021202 | mtr-miR2592be | 3 | ......_ | 8 | 85 |
| MIMAT0021201 | mtr-miR2592bd | 3 | ......_ | 8 | 85 |
| MIMAT0021200 | mtr-miR2592bc | 3 | ......_ | 8 | 85 |
| MIMAT0021199 | mtr-miR2592bb | 3 | ......_ | 8 | 85 |
| MIMAT0021198 | mtr-miR2592ba | 3 | ......_ | 8 | 85 |
| MIMAT0021197 | mtr-miR2592az | 3 | ......_ | 8 | 85 |
| MIMAT0021196 | mtr-miR2592ay | 3 | ......_ | 8 | 85 |
| MIMAT0021195 | mtr-miR2592ax | 3 | ......_ | 8 | 85 |
| MIMAT0021194 | mtr-miR2592aw | 3 | ......_ | 8 | 85 |
| MIMAT0021193 | mtr-miR2592av | 3 | ......_ | 8 | 85 |
| MIMAT0021192 | mtr-miR2592au | 3 | ......_ | 8 | 85 |
| MIMAT0021191 | mtr-miR2592at | 3 | ......_ | 8 | 85 |
| MIMAT0021190 | mtr-miR2592as | 3 | ......_ | 8 | 85 |
| MIMAT0021189 | mtr-miR2592ar | 3 | ......_ | 8 | 85 |
| MIMAT0021188 | mtr-miR2592aq | 3 | ......_ | 8 | 85 |
| MIMAT0021187 | mtr-miR2592ap | 3 | ......_ | 8 | 85 |
| MIMAT0027079 | bdi-miR166g-5p | 2 | _...... | 7 | 85 |
| MIMAT0020651 | rgl-miR5140 | 1 | ......_ | 6 | 85 |
| MIMAT0019866 | hsa-miR-4738-5p | 6 | ......_ | 1 | 85 |
| MIMAT0019447 | pma-miR-125-3p | 2 | _...... | 7 | 85 |
| MIMAT0019420 | pma-miR-29d-5p | 1 | _...... | 6 | 85 |
| MIMAT0018828 | tca-miR-3868-5p | 6 | ......_ | 1 | 85 |
| MIMAT0018084 | hsa-miR-3663-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016851 | hsa-miR-4299 | 1 | ......_ | 6 | 85 |
| MIMAT0016703 | cin-miR-4113-5p | 2 | _...... | 7 | 85 |
| MIMAT0016570 | cin-miR-4040-3p | 7 | _...... | 2 | 85 |
| MIMAT0016398 | cin-miR-15-3p | 1 | _...... | 6 | 85 |
| MIMAT0017872 | rno-miR-133c | 3 | ......_ | 8 | 85 |
| MIMAT0016162 | ppy-miR-1226 | 8 | ......_ | 3 | 85 |
| MIMAT0015521 | bmo-miR-3334 | 8 | _...... | 3 | 85 |
| MIMAT0014794 | api-miR-3015c | 6 | _...... | 1 | 85 |
| MIMAT0031064 | tgu-miR-29b-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0012716 | hvt-miR-H5-5p | 1 | ......_ | 6 | 85 |
| MIMAT0013540 | cte-miR-2688-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012491 | dsi-miR-992-5p | 3 | _...... | 8 | 85 |
| MIMAT0031158 | hbv-miR-B20-3p | 3 | ......_ | 8 | 85 |
| MIMAT0011700 | ppc-miR-2265 | 6 | _...... | 1 | 85 |
| MIMAT0011613 | crm-miR-35c-5p | 3 | _...... | 8 | 85 |
| MIMAT0011163 | hsa-miR-548q | 1 | ......_ | 6 | 85 |
| MIMAT0019178 | tca-bantam-5p | 1 | _...... | 6 | 85 |
| MIMAT0010049 | osa-miR2092-3p | 6 | ......_ | 1 | 85 |
| MIMAT0019140 | bfl-miR-29b-5p | 2 | _...... | 7 | 85 |
| MIMAT0015278 | bmo-bantam-5p | 1 | _...... | 6 | 85 |
| MIMAT0006644 | cfa-miR-1838 | 8 | ......_ | 3 | 85 |
| MIMAT0007535 | gga-miR-1656 | 8 | ......_ | 3 | 85 |
| MIMAT0007533 | gga-miR-1654 | 3 | ......_ | 8 | 85 |
| MIMAT0007369 | gma-miR1511 | 6 | _...... | 1 | 85 |
| MIMAT0015253 | cin-miR-92a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0006996 | oan-miR-133b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0006808 | oan-miR-29b-5p | 1 | _...... | 6 | 85 |
| MIMAT0005579 | mml-miR-1226 | 8 | ......_ | 3 | 85 |
| MIMAT0005578 | ptr-miR-1226 | 8 | ......_ | 3 | 85 |
| MIMAT0005577 | hsa-miR-1226-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005110 | ppt-miR1024b | 2 | _...... | 7 | 85 |
| MIMAT0005109 | ppt-miR1024a | 2 | _...... | 7 | 85 |
| MIMAT0003712 | kshv-miR-K12-12-5p | 6 | _...... | 1 | 85 |
| MIMAT0017205 | rno-miR-133b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004760 | mmu-miR-470-3p | 6 | _...... | 1 | 85 |
| MIMAT0031971 | dre-miR-133c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0003405 | dre-miR-133b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026537 | gga-miR-133c-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004717 | rno-miR-29b-5p | 1 | _...... | 6 | 85 |
| MIMAT0017083 | mmu-miR-133b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017063 | mmu-miR-29b-2-5p | 1 | _...... | 6 | 85 |
| MIMAT0003473 | mmu-miR-133a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004515 | hsa-miR-29b-2-5p | 1 | _...... | 6 | 85 |
