| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggatcgg | 7 | ||
| MIMAT0037144 | ata-miR5181-5p | 8 | ....... | 2 | 100 |
| MIMAT0034354 | cfa-miR-8859a | 2 | ....... | 8 | 100 |
| MIMAT0028192 | dev-miR-D18-5p | 2 | ....... | 8 | 100 |
| MIMAT0020705 | bdi-miR5181b | 8 | ....... | 2 | 100 |
| MIMAT0037071 | ssc-miR-9852-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030774 | prd-miR-7951-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030685 | prd-miR-7921-3p | 2 | _...... | 7 | 85 |
| MIMAT0029995 | mtr-miR7697-3p | 7 | _...... | 2 | 85 |
| MIMAT0029543 | ipu-miR-7549 | 1 | _...... | 6 | 85 |
| MIMAT0026424 | sbi-miR6226-5p | 2 | _...... | 7 | 85 |
| MIMAT0023427 | hco-miR-5935 | 3 | ......_ | 8 | 85 |
| MIMAT0019346 | mmu-miR-1843b-3p | 6 | _...... | 1 | 85 |
| MIMAT0018606 | ame-miR-3737 | 1 | _...... | 6 | 85 |
| MIMAT0016076 | ppy-miR-638 | 3 | ......_ | 8 | 85 |
| MIMAT0012507 | dsi-miR-1001-3p | 6 | ......_ | 1 | 85 |
| MIMAT0006480 | mml-miR-638 | 3 | ......_ | 8 | 85 |
| MIMAT0026754 | oan-miR-1420c-5p | 8 | _...... | 3 | 85 |
| MIMAT0005432 | cre-miR1172.2 | 3 | ......_ | 8 | 85 |
| MIMAT0003308 | hsa-miR-638 | 3 | ......_ | 8 | 85 |
