| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggatgaa | 7 | ||
| MIMAT0034073 | gra-miR8693 | 2 | ....... | 8 | 100 |
| MIMAT0012876 | hvt-miR-H11 | 2 | ....... | 8 | 100 |
| MIMAT0013475 | mtr-miR2668 | 7 | ....... | 1 | 100 |
| MIMAT0035658 | bra-miR9408-3p | 7 | _...... | 2 | 85 |
| MIMAT0035503 | bdi-miR9494 | 6 | _...... | 1 | 85 |
| MIMAT0035422 | nve-miR-9461 | 3 | ......_ | 8 | 85 |
| MIMAT0035363 | bol-miR9408 | 8 | _...... | 3 | 85 |
| MIMAT0035206 | dme-miR-9371-3p | 8 | _...... | 3 | 85 |
| MIMAT0034940 | efu-miR-9286 | 7 | _...... | 2 | 85 |
| MIMAT0034916 | efu-miR-9278 | 3 | _...... | 8 | 85 |
| MIMAT0034492 | eca-miR-8958 | 1 | ......_ | 6 | 85 |
| MIMAT0034211 | gra-miR8773 | 3 | ......_ | 8 | 85 |
| MIMAT0033654 | sma-miR-8467-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033155 | ppc-miR-8312-3p | 6 | ......_ | 1 | 85 |
| MIMAT0031408 | mmu-miR-8104 | 3 | ......_ | 8 | 85 |
| MIMAT0030581 | prd-miR-7895-3p | 7 | _...... | 2 | 85 |
| MIMAT0030566 | prd-miR-37-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032252 | rgl-miR7803b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0029996 | mtr-miR7698-5p | 8 | _...... | 3 | 85 |
| MIMAT0029942 | cbn-miR-7690 | 8 | ......_ | 3 | 85 |
| MIMAT0029778 | cbn-miR-77 | 6 | _...... | 1 | 85 |
| MIMAT0029045 | gga-miR-7445-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028604 | mdo-miR-7305-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028194 | dev-miR-D19-5p | 1 | _...... | 6 | 85 |
| MIMAT0028092 | mmu-miR-7093-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027820 | mmu-miR-6960-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027641 | hsa-miR-6870-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027360 | hsa-miR-6729-3p | 6 | ......_ | 1 | 85 |
| MIMAT0024593 | bta-miR-6121-3p | 3 | ......_ | 8 | 85 |
| MIMAT0023363 | hco-miR-5908-3p | 6 | _...... | 1 | 85 |
| MIMAT0022432 | ath-miR5659 | 2 | _...... | 7 | 85 |
| MIMAT0022164 | osa-miR5529 | 8 | _...... | 3 | 85 |
| MIMAT0022037 | aca-miR-5417 | 6 | ......_ | 1 | 85 |
| MIMAT0021359 | mtr-miR5293 | 1 | _...... | 6 | 85 |
| MIMAT0021251 | mtr-miR5253 | 1 | _...... | 6 | 85 |
| MIMAT0021129 | hsa-miR-5196-3p | 6 | ......_ | 1 | 85 |
| MIMAT0021117 | hsa-miR-5187-5p | 3 | ......_ | 8 | 85 |
| MIMAT0020610 | mmu-miR-5103 | 6 | ......_ | 1 | 85 |
| MIMAT0021070 | gma-miR5041-5p | 7 | _...... | 2 | 85 |
| MIMAT0020198 | dme-miR-4971-5p | 1 | ......_ | 6 | 85 |
| MIMAT0018750 | tca-miR-309a-5p | 2 | _...... | 7 | 85 |
| MIMAT0016735 | cin-miR-4138-5p | 3 | _...... | 8 | 85 |
| MIMAT0016540 | cin-miR-4024-3p | 7 | _...... | 2 | 85 |
| MIMAT0016181 | ppy-miR-1255b | 1 | ......_ | 6 | 85 |
| MIMAT0015405 | bmo-miR-3224 | 6 | ......_ | 1 | 85 |
| MIMAT0014677 | hma-miR-3009 | 7 | _...... | 2 | 85 |
| MIMAT0012417 | dps-miR-2573-3p | 8 | ......_ | 3 | 85 |
| MIMAT0011982 | bta-miR-2418 | 3 | ......_ | 8 | 85 |
| MIMAT0011625 | crm-miR-2228 | 6 | ......_ | 1 | 85 |
| MIMAT0011507 | crm-miR-77 | 6 | _...... | 1 | 85 |
| MIMAT0012140 | sme-miR-1993-5p | 2 | _...... | 7 | 85 |
| MIMAT0032063 | dvi-miR-278-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007821 | osa-miR812f | 3 | ......_ | 8 | 85 |
| MIMAT0006424 | mml-miR-556-5p | 1 | _...... | 6 | 85 |
| MIMAT0007644 | gga-miR-1740-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004358 | ppt-miR419 | 2 | _...... | 7 | 85 |
| MIMAT0004357 | ppt-miR414 | 6 | ......_ | 1 | 85 |
| MIMAT0001335 | osa-miR419 | 2 | _...... | 7 | 85 |
| MIMAT0001330 | osa-miR414 | 6 | ......_ | 1 | 85 |
| MIMAT0000485 | cbr-miR-77 | 6 | _...... | 1 | 85 |
| MIMAT0020805 | dme-miR-278-5p | 3 | ......_ | 8 | 85 |
| MIMAT0000049 | cel-miR-77-3p | 6 | _...... | 1 | 85 |
