| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggcctct | 7 | ||
| MIMAT0033946 | atr-miR477 | 7 | ....... | 1 | 100 |
| MIMAT0028305 | mml-miR-7180-3p | 2 | ....... | 8 | 100 |
| MIMAT0028282 | mml-miR-7172-5p | 2 | ....... | 8 | 100 |
| MIMAT0027390 | hsa-miR-6744-3p | 2 | ....... | 8 | 100 |
| MIMAT0021059 | gma-miR5036 | 7 | ....... | 1 | 100 |
| MIMAT0019901 | hsa-miR-4757-5p | 2 | ....... | 8 | 100 |
| MIMAT0019442 | pma-miR-103b-5p | 1 | ....... | 7 | 100 |
| MIMAT0016435 | cin-miR-4000e-3p | 1 | ....... | 7 | 100 |
| MIMAT0016943 | rlcv-miR-rL1-21-3p | 2 | ....... | 8 | 100 |
| MIMAT0007484 | gga-miR-1617 | 7 | ....... | 1 | 100 |
| MIMAT0036809 | oha-miR-202-3p | 6 | _...... | 1 | 85 |
| MIMAT0036244 | chi-miR-485-5p | 6 | _...... | 1 | 85 |
| MIMAT0036081 | chi-miR-2290 | 3 | _...... | 8 | 85 |
| MIMAT0035935 | chi-miR-1291 | 6 | ......_ | 1 | 85 |
| MIMAT0034663 | eca-miR-9114 | 3 | ......_ | 8 | 85 |
| MIMAT0034376 | cfa-miR-8876 | 3 | _...... | 8 | 85 |
| MIMAT0034367 | cfa-miR-8870 | 2 | _...... | 7 | 85 |
| MIMAT0034322 | cfa-miR-8829 | 3 | ......_ | 8 | 85 |
| MIMAT0033228 | ppc-miR-8341-3p | 1 | ......_ | 6 | 85 |
| MIMAT0033114 | ppc-miR-8298-3p | 3 | ......_ | 8 | 85 |
| MIMAT0032482 | ssa-miR-202-5p | 8 | _...... | 3 | 85 |
| MIMAT0032284 | ssa-miR-103-5p | 2 | _...... | 7 | 85 |
| MIMAT0031644 | bbe-miR-210-3p | 2 | _...... | 7 | 85 |
| MIMAT0030690 | prd-miR-7923-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029123 | hcmv-miR-UL69 | 8 | _...... | 3 | 85 |
| MIMAT0028972 | oan-miR-1421an-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028823 | mdo-miR-7383-3p | 6 | _...... | 1 | 85 |
| MIMAT0028820 | mdo-miR-7382-5p | 6 | _...... | 1 | 85 |
| MIMAT0028075 | mmu-miR-7084-3p | 1 | _...... | 6 | 85 |
| MIMAT0028032 | mmu-miR-7064-5p | 8 | _...... | 3 | 85 |
| MIMAT0028028 | mmu-miR-7062-5p | 8 | ......_ | 3 | 85 |
| MIMAT0027827 | mmu-miR-6963-3p | 2 | _...... | 7 | 85 |
| MIMAT0027810 | mmu-miR-6955-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027761 | mmu-miR-6930-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027668 | hsa-miR-6884-5p | 6 | _...... | 1 | 85 |
| MIMAT0027657 | hsa-miR-6878-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027655 | hsa-miR-6877-3p | 3 | _...... | 8 | 85 |
| MIMAT0027632 | hsa-miR-6866-5p | 8 | _...... | 3 | 85 |
| MIMAT0027539 | hsa-miR-6819-3p | 3 | _...... | 8 | 85 |
| MIMAT0027463 | hsa-miR-6781-3p | 2 | _...... | 7 | 85 |
| MIMAT0025714 | gga-miR-6618-5p | 6 | _...... | 1 | 85 |
| MIMAT0025666 | gga-miR-6579-3p | 6 | _...... | 1 | 85 |
| MIMAT0025637 | gga-miR-6566-5p | 6 | ......_ | 1 | 85 |
| MIMAT0025351 | pde-miR1314 | 3 | ......_ | 8 | 85 |
| MIMAT0024968 | hme-miR-282 | 3 | _...... | 8 | 85 |
| MIMAT0027329 | ppe-miR6293 | 8 | _...... | 3 | 85 |
| MIMAT0024444 | mse-miR-282 | 3 | _...... | 8 | 85 |
| MIMAT0024401 | ppy-miR-3188 | 6 | _...... | 1 | 85 |
| MIMAT0024102 | ggo-miR-485 | 6 | _...... | 1 | 85 |
| MIMAT0023672 | ame-miR-6048 | 6 | _...... | 1 | 85 |
| MIMAT0023666 | ame-miR-6044 | 7 | _...... | 2 | 85 |
| MIMAT0023576 | tca-miR-6017-3p | 1 | _...... | 6 | 85 |
| MIMAT0021850 | aca-miR-202-3p.1 | 6 | _...... | 1 | 85 |
| MIMAT0021600 | asu-miR-5367-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019312 | oar-miR-485-5p | 6 | _...... | 1 | 85 |
| MIMAT0018915 | smr-miR-282 | 3 | _...... | 8 | 85 |
| MIMAT0018691 | tca-miR-3830-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015902 | ppy-miR-485-5p | 6 | _...... | 1 | 85 |
| MIMAT0015070 | hsa-miR-3188 | 6 | _...... | 1 | 85 |
| MIMAT0015063 | hsa-miR-3183 | 1 | _...... | 6 | 85 |
| MIMAT0013244 | eca-miR-764-3p | 8 | ......_ | 3 | 85 |
| MIMAT0013216 | eca-miR-421 | 1 | ......_ | 6 | 85 |
| MIMAT0013159 | eca-miR-485-5p | 6 | _...... | 1 | 85 |
| MIMAT0013518 | hsa-miR-2682-3p | 2 | _...... | 7 | 85 |
| MIMAT0011798 | bta-miR-2290 | 1 | _...... | 6 | 85 |
| MIMAT0019149 | bfl-miR-210-5p | 2 | _...... | 7 | 85 |
| MIMAT0009435 | mmu-miR-1962 | 6 | _...... | 1 | 85 |
| MIMAT0009328 | bta-miR-485 | 6 | _...... | 1 | 85 |
| MIMAT0009132 | pta-miR1315 | 8 | ......_ | 3 | 85 |
| MIMAT0008386 | tca-miR-282-5p | 3 | _...... | 8 | 85 |
| MIMAT0006725 | cfa-miR-485 | 6 | _...... | 1 | 85 |
| MIMAT0006342 | mml-miR-485-5p | 6 | _...... | 1 | 85 |
| MIMAT0007684 | gga-miR-1773-3p | 8 | _...... | 3 | 85 |
| MIMAT0007664 | gga-miR-1757 | 8 | _...... | 3 | 85 |
| MIMAT0007595 | gga-miR-1703-5p | 6 | _...... | 1 | 85 |
| MIMAT0007517 | gga-miR-1642 | 8 | _...... | 3 | 85 |
| MIMAT0007451 | gga-miR-1589 | 3 | _...... | 8 | 85 |
| MIMAT0006095 | cin-miR-78 | 8 | ......_ | 3 | 85 |
| MIMAT0006979 | oan-miR-1421i-5p | 8 | ......_ | 3 | 85 |
| MIMAT0026751 | oan-miR-1332-5p | 6 | ......_ | 1 | 85 |
| MIMAT0005287 | rno-miR-879-5p | 6 | _...... | 1 | 85 |
| MIMAT0005252 | smo-miR1096 | 3 | _...... | 8 | 85 |
| MIMAT0004842 | mmu-miR-879-5p | 6 | _...... | 1 | 85 |
| MIMAT0004081 | osa-miR820c | 3 | ......_ | 8 | 85 |
| MIMAT0004080 | osa-miR820b | 3 | ......_ | 8 | 85 |
| MIMAT0004079 | osa-miR820a | 3 | ......_ | 8 | 85 |
| MIMAT0003895 | mmu-miR-764-3p | 8 | ......_ | 3 | 85 |
| MIMAT0003355 | gga-miR-202-3p | 6 | _...... | 1 | 85 |
| MIMAT0003203 | rno-miR-485-5p | 6 | _...... | 1 | 85 |
| MIMAT0003128 | mmu-miR-485-5p | 6 | _...... | 1 | 85 |
| MIMAT0003074 | tni-miR-202 | 6 | _...... | 1 | 85 |
| MIMAT0003073 | fru-miR-202 | 6 | _...... | 1 | 85 |
| MIMAT0002175 | hsa-miR-485-5p | 6 | _...... | 1 | 85 |
| MIMAT0001864 | dre-miR-202-3p | 6 | _...... | 1 | 85 |
| MIMAT0001320 | rno-miR-421-5p | 1 | ......_ | 6 | 85 |
| MIMAT0000346 | dme-miR-282-5p | 3 | _...... | 8 | 85 |
| MIMAT0000050 | cel-miR-78 | 8 | ......_ | 3 | 85 |
