| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | ggctggga | 8 | ||
| MIMAT0035089 | efu-miR-204 | 1 | ........ | 8 | 100 |
| MIMAT0027974 | mmu-miR-7035-5p | 1 | ........ | 8 | 100 |
| MIMAT0026843 | mml-miR-204-3p | 1 | ........ | 8 | 100 |
| MIMAT0031924 | dre-miR-204-3p | 1 | ........ | 8 | 100 |
| MIMAT0036893 | oha-miR-30c-2-3p | 2 | _....... | 8 | 87 |
| MIMAT0036813 | oha-miR-204-1-3p | 1 | _....... | 7 | 87 |
| MIMAT0036051 | chi-miR-204-3p | 1 | _....... | 7 | 87 |
| MIMAT0034472 | eca-miR-8943 | 2 | ......._ | 8 | 87 |
| MIMAT0033816 | pxy-miR-8536a | 8 | _....... | 2 | 87 |
| MIMAT0033386 | str-miR-7880r-5p | 2 | ......._ | 8 | 87 |
| MIMAT0032709 | ssa-miR-92a-3-5p | 2 | ......._ | 8 | 87 |
| MIMAT0031180 | hsa-miR-7977 | 8 | _....... | 2 | 87 |
| MIMAT0028151 | ssc-miR-7138-5p | 7 | _....... | 1 | 87 |
| MIMAT0025686 | gga-miR-6593-5p | 2 | _....... | 8 | 87 |
| MIMAT0025316 | prv-miR-LLT11b | 2 | ......._ | 8 | 87 |
| MIMAT0025315 | prv-miR-LLT11a | 2 | ......._ | 8 | 87 |
| MIMAT0024009 | cgr-miR-92a-5p | 2 | ......._ | 8 | 87 |
| MIMAT0023252 | hsa-miR-5787 | 2 | ......._ | 8 | 87 |
| MIMAT0022790 | sha-miR-204 | 1 | _....... | 7 | 87 |
| MIMAT0022297 | hsa-miR-5589-5p | 1 | ......._ | 7 | 87 |
| MIMAT0021854 | aca-miR-204a-3p | 1 | _....... | 7 | 87 |
| MIMAT0019041 | hsa-miR-4505 | 2 | ......._ | 8 | 87 |
| MIMAT0017769 | esi-miR3454e-5p | 8 | _....... | 2 | 87 |
| MIMAT0017759 | esi-miR3454b-5p | 8 | _....... | 2 | 87 |
| MIMAT0017751 | esi-miR3454c-5p | 8 | _....... | 2 | 87 |
| MIMAT0017747 | esi-miR3454a-5p | 8 | _....... | 2 | 87 |
| MIMAT0014874 | mmu-miR-3083-5p | 2 | ......._ | 8 | 87 |
| MIMAT0007449 | gga-miR-1587 | 2 | ......._ | 8 | 87 |
| MIMAT0006875 | oan-miR-1343-3p | 2 | ......._ | 8 | 87 |
| MIMAT0004250 | ath-miR832-5p | 2 | _....... | 8 | 87 |
| MIMAT0004016 | sme-miR-749 | 1 | _....... | 7 | 87 |
| MIMAT0026622 | hsa-miR-619-5p | 1 | _....... | 7 | 87 |
| MIMAT0031987 | dre-miR-204-2-3p | 1 | _....... | 7 | 87 |
| MIMAT0004739 | rno-miR-204-3p | 1 | _....... | 7 | 87 |
| MIMAT0022693 | hsa-miR-204-3p | 1 | _....... | 7 | 87 |
| MIMAT0017002 | mmu-miR-204-3p | 1 | _....... | 7 | 87 |
| MIMAT0027345 | hsa-miR-6720-5p | 8 | ......a. | 1 | 87 |
| MIMAT0025481 | hsa-miR-6512-3p | 8 | ......a. | 1 | 87 |
| MIMAT0016062 | ppy-miR-621 | 1 | ......c. | 8 | 87 |
| MIMAT0036933 | oha-miR-456 | 3 | ......__ | 8 | 75 |
| MIMAT0036894 | oha-miR-30c-1-3p | 1 | __...... | 6 | 75 |
| MIMAT0036791 | oha-miR-199b-5p | 6 | _......_ | 1 | 75 |
| MIMAT0036131 | chi-miR-30f-3p | 1 | __...... | 6 | 75 |
| MIMAT0036126 | chi-miR-30c-3p | 1 | __...... | 6 | 75 |
| MIMAT0036124 | chi-miR-30b-3p | 1 | __...... | 6 | 75 |
| MIMAT0035736 | rno-miR-1956-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035135 | efu-miR-30c | 1 | __...... | 6 | 75 |
| MIMAT0034762 | eca-miR-9181 | 3 | _......_ | 8 | 75 |
| MIMAT0034704 | eca-miR-1911 | 8 | ......__ | 3 | 75 |
| MIMAT0034702 | eca-miR-8908e | 8 | _......_ | 3 | 75 |
| MIMAT0034556 | eca-miR-9015 | 6 | __...... | 1 | 75 |
| MIMAT0034482 | eca-miR-8953 | 3 | ......__ | 8 | 75 |
| MIMAT0034400 | cfa-miR-769 | 1 | __...... | 6 | 75 |
| MIMAT0034390 | cfa-miR-8886 | 6 | __...... | 1 | 75 |
| MIMAT0034342 | cfa-miR-8847 | 6 | __...... | 1 | 75 |
| MIMAT0034309 | cfa-miR-8819 | 8 | __...... | 3 | 75 |
| MIMAT0034171 | gra-miR8747 | 6 | __...... | 1 | 75 |
| MIMAT0034134 | gra-miR7506b | 1 | __...... | 6 | 75 |
| MIMAT0033431 | str-miR-8385-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033388 | str-miR-7880s-5p | 2 | ......__ | 7 | 75 |
| MIMAT0033378 | str-miR-7880q-5p | 1 | ......__ | 6 | 75 |
| MIMAT0033352 | str-miR-5359-5p | 2 | __...... | 7 | 75 |
| MIMAT0033311 | str-miR-7880c-5p | 2 | ......__ | 7 | 75 |
| MIMAT0033011 | ppc-miR-8263-3p | 2 | __...... | 7 | 75 |
| MIMAT0032989 | ppc-miR-8260-5p | 6 | __...... | 1 | 75 |
| MIMAT0032646 | ssa-miR-456-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032612 | ssa-miR-30e-3p | 1 | __...... | 6 | 75 |
| MIMAT0032602 | ssa-miR-30a-4-3p | 1 | __...... | 6 | 75 |
| MIMAT0032601 | ssa-miR-30a-3-3p | 1 | __...... | 6 | 75 |
| MIMAT0032494 | ssa-miR-205a-2-3p | 8 | __...... | 3 | 75 |
| MIMAT0032493 | ssa-miR-205a-3p | 8 | __...... | 3 | 75 |
| MIMAT0032491 | ssa-miR-204-4-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032490 | ssa-miR-204-3-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031698 | bbe-miR-4874-3p | 3 | ......__ | 8 | 75 |
| MIMAT0030468 | prd-miR-5359-5p | 2 | __...... | 7 | 75 |
| MIMAT0030458 | prd-miR-7866-5p | 2 | __...... | 7 | 75 |
| MIMAT0030415 | hsa-miR-1273h-5p | 1 | __...... | 6 | 75 |
| MIMAT0029906 | mmu-miR-7688-5p | 3 | _......_ | 8 | 75 |
| MIMAT0029890 | mmu-miR-7684-5p | 2 | __...... | 7 | 75 |
| MIMAT0029872 | mmu-miR-7679-5p | 2 | ......__ | 7 | 75 |
| MIMAT0029845 | mmu-miR-7669-3p | 3 | _......_ | 8 | 75 |
| MIMAT0029799 | mmu-miR-7648-3p | 3 | ......__ | 8 | 75 |
| MIMAT0029630 | crm-miR-7611 | 1 | __...... | 6 | 75 |
| MIMAT0029551 | ipu-miR-7555 | 8 | ......__ | 3 | 75 |
| MIMAT0029514 | ipu-miR-456 | 3 | ......__ | 8 | 75 |
| MIMAT0029071 | gga-miR-7458-3p | 3 | __...... | 8 | 75 |
| MIMAT0028964 | oan-miR-7409-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028798 | mdo-miR-7374c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028571 | mdo-miR-7293-3p | 3 | _......_ | 8 | 75 |
| MIMAT0028551 | mdo-miR-30b-3p | 1 | __...... | 6 | 75 |
| MIMAT0027942 | mmu-miR-7019-5p | 3 | __...... | 8 | 75 |
| MIMAT0027892 | mmu-miR-6995-5p | 1 | __...... | 6 | 75 |
| MIMAT0027852 | mmu-miR-6975-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027790 | mmu-miR-6945-5p | 3 | __...... | 8 | 75 |
| MIMAT0027780 | mmu-miR-6940-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027714 | mmu-miR-6907-5p | 3 | __...... | 8 | 75 |
| MIMAT0027599 | hsa-miR-6849-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027587 | hsa-miR-6842-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027476 | hsa-miR-6788-5p | 1 | __...... | 6 | 75 |
| MIMAT0027458 | hsa-miR-6779-5p | 1 | __...... | 6 | 75 |
| MIMAT0027428 | hsa-miR-6764-5p | 6 | __...... | 1 | 75 |
| MIMAT0025809 | gga-miR-6700-5p | 1 | __...... | 6 | 75 |
| MIMAT0025738 | gga-miR-6641-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025733 | gga-miR-6637-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025725 | gga-miR-6629-5p | 1 | __...... | 6 | 75 |
| MIMAT0025680 | gga-miR-6588-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025587 | mmu-miR-3473e | 2 | ......__ | 7 | 75 |
| MIMAT0025468 | hsa-miR-6506-5p | 2 | __...... | 7 | 75 |
| MIMAT0025289 | hbr-miR408b | 2 | __...... | 7 | 75 |
| MIMAT0025249 | ptc-miR6446 | 3 | _......_ | 8 | 75 |
| MIMAT0025112 | mmu-miR-6368 | 1 | __...... | 6 | 75 |
| MIMAT0025074 | rno-miR-6333 | 3 | ......__ | 8 | 75 |
| MIMAT0024624 | mml-miR-6131 | 1 | ......__ | 6 | 75 |
| MIMAT0024615 | hsa-miR-6131 | 1 | ......__ | 6 | 75 |
| MIMAT0024605 | ptr-miR-6131 | 1 | ......__ | 6 | 75 |
| MIMAT0024042 | ptr-miR-3192 | 2 | __...... | 7 | 75 |
| MIMAT0023994 | cgr-miR-664-5p | 3 | ......__ | 8 | 75 |
| MIMAT0023897 | cgr-miR-30b-3p | 1 | __...... | 6 | 75 |
| MIMAT0023352 | hco-miR-5902-5p | 2 | __...... | 7 | 75 |
| MIMAT0022831 | sha-miR-363 | 2 | ......__ | 7 | 75 |
| MIMAT0022148 | osa-miR5514 | 6 | __...... | 1 | 75 |
| MIMAT0022129 | osa-miR5496 | 6 | ......__ | 1 | 75 |
| MIMAT0021966 | aca-miR-456 | 3 | ......__ | 8 | 75 |
| MIMAT0021925 | aca-miR-30c-3p | 1 | __...... | 6 | 75 |
| MIMAT0021923 | aca-miR-30b-3p | 1 | __...... | 6 | 75 |
| MIMAT0021630 | gma-miR408b-5p | 1 | __...... | 6 | 75 |
| MIMAT0021580 | asu-miR-5359-5p | 2 | __...... | 7 | 75 |
| MIMAT0021204 | mtr-miR2592bg | 2 | ......__ | 7 | 75 |
| MIMAT0021203 | mtr-miR2592bf | 2 | ......__ | 7 | 75 |
| MIMAT0021202 | mtr-miR2592be | 2 | ......__ | 7 | 75 |
| MIMAT0021201 | mtr-miR2592bd | 2 | ......__ | 7 | 75 |
| MIMAT0021200 | mtr-miR2592bc | 2 | ......__ | 7 | 75 |
| MIMAT0021199 | mtr-miR2592bb | 2 | ......__ | 7 | 75 |
| MIMAT0021198 | mtr-miR2592ba | 2 | ......__ | 7 | 75 |
| MIMAT0021197 | mtr-miR2592az | 2 | ......__ | 7 | 75 |
| MIMAT0021196 | mtr-miR2592ay | 2 | ......__ | 7 | 75 |
| MIMAT0021195 | mtr-miR2592ax | 2 | ......__ | 7 | 75 |
| MIMAT0021194 | mtr-miR2592aw | 2 | ......__ | 7 | 75 |
| MIMAT0021193 | mtr-miR2592av | 2 | ......__ | 7 | 75 |
| MIMAT0021192 | mtr-miR2592au | 2 | ......__ | 7 | 75 |
| MIMAT0021191 | mtr-miR2592at | 2 | ......__ | 7 | 75 |
| MIMAT0021190 | mtr-miR2592as | 2 | ......__ | 7 | 75 |
| MIMAT0021189 | mtr-miR2592ar | 2 | ......__ | 7 | 75 |
| MIMAT0021188 | mtr-miR2592aq | 2 | ......__ | 7 | 75 |
| MIMAT0021187 | mtr-miR2592ap | 2 | ......__ | 7 | 75 |
| MIMAT0020655 | bdi-miR169i | 6 | ......__ | 1 | 75 |
| MIMAT0021021 | hsa-miR-5001-5p | 3 | ......__ | 8 | 75 |
| MIMAT0020197 | dme-miR-4970-5p | 1 | __...... | 6 | 75 |
| MIMAT0020180 | dme-miR-4960-3p | 1 | __...... | 6 | 75 |
| MIMAT0020454 | bfl-miR-4874-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019853 | hsa-miR-4731-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019782 | hsa-miR-4691-3p | 6 | ......__ | 1 | 75 |
| MIMAT0019707 | hsa-miR-4646-5p | 2 | __...... | 7 | 75 |
| MIMAT0019554 | pma-miR-456 | 3 | ......__ | 8 | 75 |
| MIMAT0020367 | mmu-miR-3473b | 2 | ......__ | 7 | 75 |
| MIMAT0019069 | hsa-miR-4530 | 6 | _......_ | 1 | 75 |
| MIMAT0019033 | hsa-miR-4498 | 3 | ......__ | 8 | 75 |
| MIMAT0019027 | hsa-miR-4492 | 3 | ......__ | 8 | 75 |
| MIMAT0019020 | hsa-miR-4486 | 1 | _......_ | 6 | 75 |
| MIMAT0019007 | hsa-miR-3689c | 1 | __...... | 6 | 75 |
| MIMAT0018985 | hsa-miR-3135b | 1 | ......__ | 6 | 75 |
| MIMAT0018945 | hsa-miR-4430 | 2 | ......__ | 7 | 75 |
| MIMAT0022976 | ssc-miR-30c-1-3p | 1 | __...... | 6 | 75 |
| MIMAT0018181 | hsa-miR-3689b-3p | 1 | __...... | 6 | 75 |
| MIMAT0018118 | hsa-miR-3689a-3p | 1 | __...... | 6 | 75 |
| MIMAT0018072 | hsa-miR-3652 | 2 | ......__ | 7 | 75 |
| MIMAT0018036 | vvi-miR3632-3p | 8 | __...... | 3 | 75 |
| MIMAT0016868 | hsa-miR-4314 | 3 | __...... | 8 | 75 |
| MIMAT0016852 | hsa-miR-4298 | 1 | __...... | 6 | 75 |
| MIMAT0016342 | ahy-miR3516 | 1 | _......_ | 6 | 75 |
| MIMAT0016328 | ahy-miR408-5p | 1 | __...... | 6 | 75 |
| MIMAT0016053 | ppy-miR-612 | 1 | _......_ | 6 | 75 |
| MIMAT0015646 | mmu-miR-3474 | 3 | __...... | 8 | 75 |
| MIMAT0017745 | esi-miR3454g-5p | 8 | _......_ | 3 | 75 |
| MIMAT0015078 | hsa-miR-3194-5p | 8 | ......__ | 3 | 75 |
| MIMAT0015076 | hsa-miR-3192-5p | 2 | __...... | 7 | 75 |
| MIMAT0014902 | mmu-miR-3090-3p | 6 | __...... | 1 | 75 |
| MIMAT0014865 | mmu-miR-3078-3p | 3 | _......_ | 8 | 75 |
| MIMAT0014686 | tgu-miR-30c-3p | 1 | __...... | 6 | 75 |
| MIMAT0014469 | tgu-miR-456-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013958 | ssc-miR-769-3p | 1 | __...... | 6 | 75 |
| MIMAT0013016 | eca-miR-769a-3p | 1 | __...... | 6 | 75 |
| MIMAT0012957 | eca-miR-1905b | 8 | ......__ | 3 | 75 |
| MIMAT0012815 | ptr-miR-762 | 3 | ......__ | 8 | 75 |
| MIMAT0012791 | mml-miR-762 | 3 | ......__ | 8 | 75 |
| MIMAT0017353 | mmu-miR-664-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012522 | dsi-miR-2494-3p | 6 | __...... | 1 | 75 |
| MIMAT0012458 | dsi-miR-1000-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012266 | dps-miR-1000-3p | 3 | _......_ | 8 | 75 |
| MIMAT0012241 | dps-miR-311-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012203 | dme-miR-2494-3p | 7 | __...... | 2 | 75 |
| MIMAT0012078 | bta-miR-664a | 3 | ......__ | 8 | 75 |
| MIMAT0012024 | bta-miR-2447 | 2 | __...... | 7 | 75 |
| MIMAT0011998 | bta-miR-2428 | 2 | ......__ | 7 | 75 |
| MIMAT0011991 | bta-miR-320b | 2 | _......_ | 7 | 75 |
| MIMAT0011794 | bta-miR-2287 | 1 | __...... | 6 | 75 |
| MIMAT0011691 | ppc-miR-2240c | 6 | __...... | 1 | 75 |
| MIMAT0011689 | ppc-miR-2240b | 6 | __...... | 1 | 75 |
| MIMAT0011206 | gga-miR-2130 | 6 | __...... | 1 | 75 |
| MIMAT0009814 | nve-miR-2045-5p | 6 | __...... | 1 | 75 |
| MIMAT0009426 | mmu-miR-1955-5p | 8 | __...... | 3 | 75 |
| MIMAT0009386 | bta-miR-940 | 3 | ......__ | 8 | 75 |
| MIMAT0008400 | hsv1-miR-H3-3p | 1 | __...... | 6 | 75 |
| MIMAT0008274 | ptr-miR-612 | 1 | _......_ | 6 | 75 |
| MIMAT0015269 | ssc-miR-30b-3p | 1 | __...... | 6 | 75 |
| MIMAT0007593 | gga-miR-1701 | 1 | ......__ | 6 | 75 |
| MIMAT0007570 | gga-miR-1683 | 2 | __...... | 7 | 75 |
| MIMAT0015253 | cin-miR-92a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0007262 | oan-miR-1419e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0007044 | oan-miR-30b-3p | 1 | __...... | 6 | 75 |
| MIMAT0006946 | oan-miR-1353 | 6 | ......__ | 1 | 75 |
| MIMAT0006934 | oan-miR-1349 | 1 | _......_ | 6 | 75 |
| MIMAT0006912 | oan-miR-30c-2-3p | 1 | __...... | 6 | 75 |
| MIMAT0006873 | oan-miR-1342 | 3 | __...... | 8 | 75 |
| MIMAT0005028 | dme-miR-1015-3p | 3 | __...... | 8 | 75 |
| MIMAT0020900 | dme-miR-1000-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004961 | ppt-miR900-5p | 6 | __...... | 1 | 75 |
| MIMAT0003777 | gga-miR-456-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032012 | dre-miR-735-5p | 1 | ......__ | 6 | 75 |
| MIMAT0012534 | bta-miR-30b-3p | 1 | __...... | 6 | 75 |
| MIMAT0003892 | mmu-miR-762 | 3 | ......__ | 8 | 75 |
| MIMAT0010313 | hsa-miR-762 | 3 | ......__ | 8 | 75 |
| MIMAT0003887 | hsa-miR-769-3p | 1 | __...... | 6 | 75 |
| MIMAT0017229 | rno-miR-664-2-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017228 | rno-miR-664-1-5p | 3 | ......__ | 8 | 75 |
| MIMAT0003280 | hsa-miR-612 | 1 | _......_ | 6 | 75 |
| MIMAT0026563 | mml-miR-30b-3p | 1 | __...... | 6 | 75 |
| MIMAT0002184 | kshv-miR-K12-9-5p | 7 | _......_ | 2 | 75 |
| MIMAT0022922 | ssc-miR-30c-3p | 1 | __...... | 6 | 75 |
| MIMAT0001882 | dre-miR-456 | 3 | ......__ | 8 | 75 |
| MIMAT0005442 | rno-miR-30c-2-3p | 1 | __...... | 6 | 75 |
| MIMAT0004721 | rno-miR-30b-3p | 1 | __...... | 6 | 75 |
| MIMAT0004719 | rno-miR-30c-1-3p | 1 | __...... | 6 | 75 |
| MIMAT0004674 | hsa-miR-30c-1-3p | 1 | __...... | 6 | 75 |
| MIMAT0005438 | mmu-miR-30c-2-3p | 1 | __...... | 6 | 75 |
| MIMAT0004616 | mmu-miR-30c-1-3p | 1 | __...... | 6 | 75 |
| MIMAT0004589 | hsa-miR-30b-3p | 1 | __...... | 6 | 75 |
| MIMAT0004550 | hsa-miR-30c-2-3p | 1 | __...... | 6 | 75 |
| MIMAT0004524 | mmu-miR-30b-3p | 1 | __...... | 6 | 75 |
