| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | gtcgtgg | 7 | ||
| MIMAT0035790 | tae-miR9672a-3p | 7 | ....... | 1 | 100 |
| MIMAT0018958 | hsa-miR-4440 | 2 | ....... | 8 | 100 |
| MIMAT0005553 | mcmv-miR-M95-1-5p | 2 | ....... | 8 | 100 |
| MIMAT0037129 | ata-miR9672-3p | 8 | _...... | 3 | 85 |
| MIMAT0036984 | tae-miR9672b | 8 | _...... | 3 | 85 |
| MIMAT0034880 | efu-miR-9260 | 1 | ......_ | 6 | 85 |
| MIMAT0031719 | bbe-miR-92a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031551 | ppe-miR8128-3p | 1 | _...... | 6 | 85 |
| MIMAT0023465 | hco-miR-5961 | 7 | _...... | 2 | 85 |
| MIMAT0023432 | hco-miR-5937 | 3 | _...... | 8 | 85 |
| MIMAT0023265 | osa-miR5797 | 1 | _...... | 6 | 85 |
| MIMAT0018323 | gma-miR4404 | 3 | _...... | 8 | 85 |
| MIMAT0018249 | gma-miR4357 | 3 | ......_ | 8 | 85 |
| MIMAT0018786 | tca-miR-92c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0018590 | ame-miR-3724 | 2 | _...... | 7 | 85 |
| MIMAT0018101 | hsa-miR-3677-3p | 2 | _...... | 7 | 85 |
| MIMAT0016153 | ppy-miR-1204 | 1 | _...... | 6 | 85 |
| MIMAT0015594 | bmo-miR-3391-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015578 | bmo-miR-3383-3p | 6 | _...... | 1 | 85 |
| MIMAT0014321 | aae-miR-92b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0013003 | eca-miR-1204 | 1 | _...... | 6 | 85 |
| MIMAT0012897 | eca-miR-1905a | 8 | _...... | 3 | 85 |
| MIMAT0032085 | dvi-miR-92b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019112 | tca-miR-92b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007958 | ptr-miR-1204 | 1 | _...... | 6 | 85 |
| MIMAT0005868 | hsa-miR-1204 | 1 | _...... | 6 | 85 |
