| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tagcccg | 7 | ||
| MIMAT0029838 | mmu-miR-7666-5p | 2 | ....... | 8 | 100 |
| MIMAT0016961 | rlcv-miR-rL1-34-3p | 2 | ....... | 8 | 100 |
| MIMAT0034734 | eca-miR-9157 | 7 | _...... | 2 | 85 |
| MIMAT0034525 | eca-miR-8988 | 1 | ......_ | 6 | 85 |
| MIMAT0034259 | gra-miR8728 | 6 | _...... | 1 | 85 |
| MIMAT0031322 | stu-miR399o-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031320 | stu-miR399n-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031318 | stu-miR399m-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031316 | stu-miR399l-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031314 | stu-miR399k-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031312 | stu-miR399j-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031260 | stu-miR399i-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030971 | stu-miR399h | 6 | ......_ | 1 | 85 |
| MIMAT0030970 | stu-miR399g-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030969 | stu-miR399f-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030968 | stu-miR399e-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030967 | stu-miR399d-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030966 | stu-miR399c-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030965 | stu-miR399b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030964 | stu-miR399a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030854 | stu-miR7985 | 6 | _...... | 1 | 85 |
| MIMAT0029791 | tgu-miR-7645-3p | 7 | _...... | 2 | 85 |
| MIMAT0028796 | mdo-miR-7375-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028269 | mml-miR-7167-3p | 8 | _...... | 3 | 85 |
| MIMAT0025819 | gga-miR-6709-5p | 1 | _...... | 6 | 85 |
| MIMAT0025684 | gga-miR-6591-3p | 3 | _...... | 8 | 85 |
| MIMAT0025583 | mmu-miR-6538 | 8 | _...... | 3 | 85 |
| MIMAT0024381 | ppy-miR-3940 | 2 | _...... | 7 | 85 |
| MIMAT0024363 | ppy-miR-3943 | 1 | ......_ | 6 | 85 |
| MIMAT0024210 | ggo-miR-3943 | 1 | ......_ | 6 | 85 |
| MIMAT0024046 | ptr-miR-3943 | 1 | ......_ | 6 | 85 |
| MIMAT0023694 | hsa-miR-6069 | 6 | ......_ | 1 | 85 |
| MIMAT0023300 | osa-miR5826 | 1 | ......_ | 6 | 85 |
| MIMAT0021382 | isc-miR-5311 | 1 | _...... | 6 | 85 |
| MIMAT0019871 | hsa-miR-4741 | 6 | _...... | 1 | 85 |
| MIMAT0019808 | hsa-miR-4707-3p | 1 | _...... | 6 | 85 |
| MIMAT0019023 | hsa-miR-4489 | 8 | ......_ | 3 | 85 |
| MIMAT0018360 | hsa-miR-3944-3p | 8 | _...... | 3 | 85 |
| MIMAT0018359 | hsa-miR-3943 | 1 | ......_ | 6 | 85 |
| MIMAT0018356 | hsa-miR-3940-3p | 2 | _...... | 7 | 85 |
| MIMAT0018129 | pab-miR3697 | 1 | ......_ | 6 | 85 |
| MIMAT0018071 | hsa-miR-3651 | 3 | ......_ | 8 | 85 |
| MIMAT0016500 | cin-miR-4008c-3p | 8 | ......_ | 3 | 85 |
| MIMAT0013840 | bta-miR-2882 | 1 | _...... | 6 | 85 |
| MIMAT0011919 | bta-miR-2373-3p | 3 | _...... | 8 | 85 |
| MIMAT0011586 | crm-miR-86-3p | 8 | ......_ | 3 | 85 |
| MIMAT0007827 | osa-miR1874-5p | 8 | ......_ | 3 | 85 |
| MIMAT0007558 | gga-miR-1674 | 6 | ......_ | 1 | 85 |
| MIMAT0007485 | gga-miR-1618-3p | 2 | _...... | 7 | 85 |
| MIMAT0007459 | gga-miR-1595-3p | 1 | ......_ | 6 | 85 |
| MIMAT0007115 | oan-miR-1379 | 8 | _...... | 3 | 85 |
| MIMAT0006946 | oan-miR-1353 | 3 | _...... | 8 | 85 |
| MIMAT0020320 | cel-miR-74-5p | 6 | _...... | 1 | 85 |
