| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tagcggta | 8 | ||
| MIMAT0030263 | bdi-miR7758-3p | 1 | ......._ | 7 | 87 |
| MIMAT0018744 | tca-miR-3848-5p | 2 | ......._ | 8 | 87 |
| MIMAT0016874 | hsa-miR-4321 | 2 | ......._ | 8 | 87 |
| MIMAT0011584 | crm-miR-244-3p | 7 | _....... | 1 | 87 |
| MIMAT0034904 | efu-miR-9186l | 1 | .t...... | 8 | 87 |
| MIMAT0037275 | ame-miR-9871 | 2 | __...... | 7 | 75 |
| MIMAT0035322 | gsa-miR-9390-5p | 2 | __...... | 7 | 75 |
| MIMAT0035164 | efu-miR-106 | 6 | __...... | 1 | 75 |
| MIMAT0032870 | ppc-miR-8219-5p | 6 | _......_ | 1 | 75 |
| MIMAT0029328 | lja-miR7516-5p | 1 | ......__ | 6 | 75 |
| MIMAT0029109 | gga-miR-7477-3p | 6 | __...... | 1 | 75 |
| MIMAT0028191 | dev-miR-D17-3p | 7 | _......_ | 2 | 75 |
| MIMAT0025299 | mja-miR-6491 | 1 | __...... | 6 | 75 |
| MIMAT0022308 | cel-miR-5593-3p | 7 | __...... | 2 | 75 |
| MIMAT0019942 | hsa-miR-4781-5p | 1 | ......__ | 6 | 75 |
| MIMAT0019881 | hsa-miR-4746-3p | 1 | _......_ | 6 | 75 |
| MIMAT0018631 | tca-miR-2765-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016802 | cin-miR-4185-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015545 | bmo-miR-3359 | 2 | __...... | 7 | 75 |
| MIMAT0014260 | aae-miR-308-5p | 2 | __...... | 7 | 75 |
| MIMAT0011497 | cbr-miR-2225-5p | 6 | _......_ | 1 | 75 |
| MIMAT0010065 | osa-miR2100-3p | 7 | _......_ | 2 | 75 |
| MIMAT0007151 | oan-miR-1385 | 6 | __...... | 1 | 75 |
| MIMAT0001582 | hcmv-miR-US25-2-5p | 1 | _......_ | 6 | 75 |
| MIMAT0001581 | hcmv-miR-US25-1-5p | 7 | _......_ | 2 | 75 |
