| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tagggca | 7 | ||
| MIMAT0035973 | chi-miR-146b-3p | 7 | ....... | 1 | 100 |
| MIMAT0035020 | efu-miR-146 | 7 | ....... | 1 | 100 |
| MIMAT0032435 | ssa-miR-18b-3p | 8 | ....... | 2 | 100 |
| MIMAT0028154 | ssc-miR-7139-3p | 1 | ....... | 7 | 100 |
| MIMAT0019210 | hsa-miR-3157-3p | 8 | ....... | 2 | 100 |
| MIMAT0014700 | hsv2-miR-H13 | 2 | ....... | 8 | 100 |
| MIMAT0014652 | tgu-miR-146b-3p | 7 | ....... | 1 | 100 |
| MIMAT0012892 | eca-miR-146b-3p | 7 | ....... | 1 | 100 |
| MIMAT0011614 | crm-miR-58b-5p | 7 | ....... | 1 | 100 |
| MIMAT0011545 | crm-miR-58a | 7 | ....... | 1 | 100 |
| MIMAT0009726 | lgi-miR-1984 | 7 | ....... | 1 | 100 |
| MIMAT0009715 | hru-miR-1984 | 7 | ....... | 1 | 100 |
| MIMAT0007540 | gga-miR-1659 | 1 | ....... | 7 | 100 |
| MIMAT0003397 | dre-miR-18b-3p | 8 | ....... | 2 | 100 |
| MIMAT0004751 | hsa-miR-18b-3p | 7 | ....... | 1 | 100 |
| MIMAT0015100 | cel-miR-58a-5p | 7 | ....... | 1 | 100 |
| MIMAT0036771 | oha-miR-18b-3p | 8 | _...... | 3 | 85 |
| MIMAT0036769 | oha-miR-18a-3p | 8 | _...... | 3 | 85 |
| MIMAT0036689 | oha-miR-130b-5p | 6 | _...... | 1 | 85 |
| MIMAT0036687 | oha-miR-130a-5p | 6 | _...... | 1 | 85 |
| MIMAT0036297 | chi-miR-874-3p | 7 | _...... | 2 | 85 |
| MIMAT0036016 | chi-miR-18a-3p | 8 | _...... | 3 | 85 |
| MIMAT0035102 | efu-miR-874 | 7 | _...... | 2 | 85 |
| MIMAT0034795 | efu-miR-9207 | 2 | _...... | 7 | 85 |
| MIMAT0034732 | eca-miR-9156 | 3 | ......_ | 8 | 85 |
| MIMAT0034509 | eca-miR-8972 | 6 | _...... | 1 | 85 |
| MIMAT0034445 | eca-miR-8917 | 8 | _...... | 3 | 85 |
| MIMAT0032433 | ssa-miR-18a-3p | 8 | _...... | 3 | 85 |
| MIMAT0031192 | stu-miR8006-3p | 6 | _...... | 1 | 85 |
| MIMAT0031179 | hsa-miR-7976 | 6 | _...... | 1 | 85 |
| MIMAT0030411 | hsa-miR-7843-5p | 2 | _...... | 7 | 85 |
| MIMAT0030302 | bdi-miR7776-5p.1 | 8 | _...... | 3 | 85 |
| MIMAT0029860 | mmu-miR-7676-5p | 1 | _...... | 6 | 85 |
| MIMAT0029826 | mmu-miR-7660-5p | 8 | _...... | 3 | 85 |
| MIMAT0029810 | mmu-miR-7652-5p | 3 | _...... | 8 | 85 |
| MIMAT0031068 | oan-miR-124a-2-3p | 2 | _...... | 7 | 85 |
| MIMAT0028797 | mdo-miR-7375-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028752 | mdo-miR-1545c-5p | 8 | _...... | 3 | 85 |
| MIMAT0028045 | mmu-miR-7069-3p | 8 | _...... | 3 | 85 |
| MIMAT0027673 | hsa-miR-6886-3p | 6 | _...... | 1 | 85 |
| MIMAT0027658 | hsa-miR-6879-5p | 2 | _...... | 7 | 85 |
| MIMAT0027499 | hsa-miR-6799-3p | 6 | _...... | 1 | 85 |
| MIMAT0027371 | hsa-miR-6735-5p | 2 | _...... | 7 | 85 |
| MIMAT0025792 | gga-miR-6686-3p | 1 | _...... | 6 | 85 |
| MIMAT0025384 | ssc-miR-874 | 7 | _...... | 2 | 85 |
| MIMAT0025097 | mmu-miR-6354 | 6 | _...... | 1 | 85 |
| MIMAT0024853 | rno-miR-3473 | 3 | ......_ | 8 | 85 |
| MIMAT0024406 | ppy-miR-2278 | 2 | _...... | 7 | 85 |
| MIMAT0024140 | ggo-miR-874 | 7 | _...... | 2 | 85 |
| MIMAT0024007 | cgr-miR-874 | 7 | _...... | 2 | 85 |
| MIMAT0023818 | cgr-miR-18a-3p | 8 | _...... | 3 | 85 |
| MIMAT0023776 | cgr-miR-146b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022358 | mmu-miR-1231-3p | 6 | _...... | 1 | 85 |
| MIMAT0021818 | aca-miR-18a-3p | 8 | _...... | 3 | 85 |
| MIMAT0021741 | aca-miR-130a-2-5p | 7 | _...... | 2 | 85 |
| MIMAT0019941 | hsa-miR-4436b-3p | 2 | _...... | 7 | 85 |
| MIMAT0019909 | hsa-miR-4761-3p | 2 | _...... | 7 | 85 |
| MIMAT0022977 | hsa-miR-4632-5p | 2 | _...... | 7 | 85 |
| MIMAT0019338 | mmu-miR-3961 | 6 | _...... | 1 | 85 |
| MIMAT0018361 | hsa-miR-3945 | 1 | _...... | 6 | 85 |
| MIMAT0018012 | vvi-miR3624-3p | 3 | _...... | 8 | 85 |
| MIMAT0017996 | hsa-miR-3616-3p | 3 | _...... | 8 | 85 |
| MIMAT0016921 | hsa-miR-4290 | 6 | _...... | 1 | 85 |
| MIMAT0016882 | hsa-miR-4253 | 1 | _...... | 6 | 85 |
| MIMAT0017889 | rno-miR-3590-5p | 6 | _...... | 1 | 85 |
| MIMAT0016138 | ppy-miR-938 | 6 | _...... | 1 | 85 |
| MIMAT0016112 | ppy-miR-874 | 7 | _...... | 2 | 85 |
| MIMAT0015769 | ppy-miR-146b-3p | 6 | _...... | 1 | 85 |
| MIMAT0019214 | hsa-miR-3173-5p | 6 | _...... | 1 | 85 |
| MIMAT0014950 | mmu-miR-3109-3p | 1 | ......_ | 6 | 85 |
| MIMAT0014895 | mmu-miR-3087-5p | 2 | _...... | 7 | 85 |
| MIMAT0014780 | api-miR-3042 | 2 | _...... | 7 | 85 |
| MIMAT0013863 | hsa-miR-2909 | 3 | ......_ | 8 | 85 |
| MIMAT0013069 | eca-miR-874 | 7 | _...... | 2 | 85 |
| MIMAT0026934 | mdo-miR-106-3p | 8 | _...... | 3 | 85 |
| MIMAT0012057 | bta-miR-2467-3p | 2 | _...... | 7 | 85 |
| MIMAT0012018 | bta-miR-2443 | 3 | _...... | 8 | 85 |
| MIMAT0011994 | bta-miR-2425-5p | 3 | _...... | 8 | 85 |
| MIMAT0011402 | sme-miR-2206-5p | 1 | _...... | 6 | 85 |
| MIMAT0009930 | cfa-miR-874 | 7 | _...... | 2 | 85 |
| MIMAT0009827 | nve-miR-2043b-3p | 6 | _...... | 1 | 85 |
| MIMAT0009378 | bta-miR-874 | 7 | _...... | 2 | 85 |
| MIMAT0008345 | ptr-miR-938 | 6 | _...... | 1 | 85 |
| MIMAT0008325 | ptr-miR-874 | 7 | _...... | 2 | 85 |
| MIMAT0007827 | osa-miR1874-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015270 | osa-miR1870-3p | 3 | ......_ | 8 | 85 |
| MIMAT0006516 | mml-miR-874-3p | 7 | _...... | 2 | 85 |
| MIMAT0006205 | mml-miR-146b-3p | 6 | _...... | 1 | 85 |
| MIMAT0007697 | gga-miR-1785 | 3 | _...... | 8 | 85 |
| MIMAT0026782 | gga-miR-1754-3p | 1 | _...... | 6 | 85 |
| MIMAT0007638 | gga-miR-1736-5p | 1 | _...... | 6 | 85 |
| MIMAT0007522 | gga-miR-1646 | 8 | _...... | 3 | 85 |
| MIMAT0007444 | gga-miR-1583 | 3 | ......_ | 8 | 85 |
| MIMAT0007008 | oan-miR-146b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0005417 | cre-miR1163.2 | 1 | _...... | 6 | 85 |
| MIMAT0005411 | cre-miR1160.1 | 7 | _...... | 2 | 85 |
| MIMAT0005284 | rno-miR-874-3p | 7 | _...... | 2 | 85 |
| MIMAT0004981 | hsa-miR-938 | 6 | _...... | 1 | 85 |
| MIMAT0004911 | hsa-miR-874-3p | 7 | _...... | 2 | 85 |
| MIMAT0004853 | mmu-miR-874-3p | 7 | _...... | 2 | 85 |
| MIMAT0026705 | mdo-miR-18a-3p | 8 | _...... | 3 | 85 |
| MIMAT0005462 | xtr-miR-18a-3p | 8 | _...... | 3 | 85 |
| MIMAT0004826 | mmu-miR-146b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004766 | hsa-miR-146b-3p | 6 | _...... | 1 | 85 |
| MIMAT0026595 | mml-miR-18a-3p | 8 | _...... | 3 | 85 |
| MIMAT0026499 | gga-miR-18a-3p | 8 | _...... | 3 | 85 |
| MIMAT0017095 | rno-miR-18a-3p | 8 | _...... | 3 | 85 |
| MIMAT0004626 | mmu-miR-18a-3p | 8 | _...... | 3 | 85 |
| MIMAT0004540 | mmu-miR-186-3p | 6 | ......_ | 1 | 85 |
| MIMAT0002891 | hsa-miR-18a-3p | 8 | _...... | 3 | 85 |
