| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tagtaacc | 8 | ||
| MIMAT0033102 | ppc-miR-8294-3p | 2 | ......._ | 8 | 87 |
| MIMAT0028573 | mdo-miR-7294-3p | 1 | ......._ | 7 | 87 |
| MIMAT0020049 | sko-miR-4833 | 2 | ......._ | 8 | 87 |
| MIMAT0016335 | ahy-miR3511-3p | 8 | ......._ | 2 | 87 |
| MIMAT0032898 | ppc-miR-8227-5p | 1 | .g...... | 8 | 87 |
| MIMAT0029112 | gga-miR-7479-5p | 1 | ......g. | 8 | 87 |
| MIMAT0002071 | ptc-miR476a | 1 | ......t. | 8 | 87 |
| MIMAT0036930 | oha-miR-451-3p | 1 | ......__ | 6 | 75 |
| MIMAT0036718 | oha-miR-1397-3p | 3 | __...... | 8 | 75 |
| MIMAT0036238 | chi-miR-451-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036209 | chi-miR-409-5p | 7 | __...... | 2 | 75 |
| MIMAT0035253 | gsa-miR-190-3p | 3 | ......__ | 8 | 75 |
| MIMAT0034801 | efu-miR-9210 | 7 | __...... | 2 | 75 |
| MIMAT0034695 | eca-miR-9142 | 3 | _......_ | 8 | 75 |
| MIMAT0034246 | gra-miR8657b | 3 | ......__ | 8 | 75 |
| MIMAT0034025 | gra-miR8657e | 3 | ......__ | 8 | 75 |
| MIMAT0034024 | gra-miR8657d | 3 | ......__ | 8 | 75 |
| MIMAT0034023 | gra-miR8657c | 3 | ......__ | 8 | 75 |
| MIMAT0034022 | gra-miR8657a | 3 | ......__ | 8 | 75 |
| MIMAT0032742 | ssa-miR-8159-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032649 | ssa-miR-459-5p | 3 | _......_ | 8 | 75 |
| MIMAT0030730 | prd-miR-7936-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030208 | bdi-miR7736-5p | 7 | ......__ | 2 | 75 |
| MIMAT0029517 | ipu-miR-459 | 3 | _......_ | 8 | 75 |
| MIMAT0028887 | mdo-miR-7394a-3p | 3 | __...... | 8 | 75 |
| MIMAT0028883 | mdo-miR-7392-3p | 1 | __...... | 6 | 75 |
| MIMAT0028203 | dre-miR-7146-5p | 1 | __...... | 6 | 75 |
| MIMAT0026304 | ccr-miR-459-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027341 | tgu-miR-1397-3p | 3 | __...... | 8 | 75 |
| MIMAT0024170 | ggo-miR-409 | 7 | __...... | 2 | 75 |
| MIMAT0024005 | cgr-miR-872-5p | 8 | __...... | 3 | 75 |
| MIMAT0023950 | cgr-miR-409-5p | 7 | __...... | 2 | 75 |
| MIMAT0022664 | ola-miR-459-5p | 3 | _......_ | 8 | 75 |
| MIMAT0021961 | aca-miR-451-3p | 1 | ......__ | 6 | 75 |
| MIMAT0021690 | aca-miR-5392 | 7 | _......_ | 2 | 75 |
| MIMAT0021573 | asu-miR-5356a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0021449 | asu-miR-43a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019555 | pma-miR-459 | 3 | _......_ | 8 | 75 |
| MIMAT0019327 | oar-miR-409-5p | 7 | __...... | 2 | 75 |
| MIMAT0018697 | tca-miR-3833-3p | 3 | _......_ | 8 | 75 |
| MIMAT0018169 | mghv-miR-M1-11-3p | 2 | __...... | 7 | 75 |
| MIMAT0018602 | ame-miR-3733 | 6 | ......__ | 1 | 75 |
| MIMAT0016582 | cin-miR-4046-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016110 | ppy-miR-802 | 2 | _......_ | 7 | 75 |
| MIMAT0016068 | ppy-miR-628-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015875 | ppy-miR-409-5p | 7 | __...... | 2 | 75 |
| MIMAT0015611 | bmo-miR-3406-5p | 1 | ......__ | 6 | 75 |
| MIMAT0014761 | api-miR-3025 | 3 | ......__ | 8 | 75 |
| MIMAT0026958 | tgu-miR-1451-3p | 2 | _......_ | 7 | 75 |
| MIMAT0013183 | eca-miR-802 | 2 | _......_ | 7 | 75 |
| MIMAT0013151 | eca-miR-409-5p | 7 | __...... | 2 | 75 |
| MIMAT0013119 | eca-miR-872 | 8 | __...... | 3 | 75 |
| MIMAT0012840 | rno-miR-802-5p | 3 | _......_ | 8 | 75 |
| MIMAT0012717 | hvt-miR-H5-3p | 2 | __...... | 7 | 75 |
| MIMAT0012311 | dps-miR-2523 | 2 | _......_ | 7 | 75 |
| MIMAT0012177 | bdi-miR1139 | 2 | _......_ | 7 | 75 |
| MIMAT0011423 | sme-miR-2201-5p | 7 | _......_ | 2 | 75 |
| MIMAT0011231 | sme-miR-2150 | 7 | __...... | 2 | 75 |
| MIMAT0026920 | gga-miR-2131-3p | 8 | _......_ | 3 | 75 |
| MIMAT0009928 | cfa-miR-802 | 2 | _......_ | 7 | 75 |
| MIMAT0009310 | bta-miR-409a | 7 | __...... | 2 | 75 |
| MIMAT0008323 | ptr-miR-802 | 2 | _......_ | 7 | 75 |
| MIMAT0008287 | ptr-miR-628 | 3 | ......__ | 8 | 75 |
| MIMAT0006515 | mml-miR-802 | 2 | _......_ | 7 | 75 |
| MIMAT0006475 | mml-miR-628-3p | 3 | ......__ | 8 | 75 |
| MIMAT0006314 | mml-miR-409-5p | 7 | __...... | 2 | 75 |
| MIMAT0007311 | oan-miR-1421al-5p | 8 | __...... | 3 | 75 |
| MIMAT0007200 | oan-miR-1397-3p | 3 | __...... | 8 | 75 |
| MIMAT0007181 | oan-miR-802-5p | 3 | _......_ | 8 | 75 |
| MIMAT0006967 | oan-miR-1421c-5p | 8 | __...... | 3 | 75 |
| MIMAT0006963 | oan-miR-1421a-5p | 8 | __...... | 3 | 75 |
| MIMAT0005374 | tae-miR1139 | 3 | _......_ | 8 | 75 |
| MIMAT0005282 | rno-miR-872-5p | 8 | __...... | 3 | 75 |
| MIMAT0004934 | mmu-miR-872-5p | 8 | __...... | 3 | 75 |
| MIMAT0003933 | ath-miR774a | 8 | __...... | 3 | 75 |
| MIMAT0004188 | mmu-miR-802-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004185 | hsa-miR-802 | 2 | _......_ | 7 | 75 |
| MIMAT0003297 | hsa-miR-628-3p | 3 | ......__ | 8 | 75 |
| MIMAT0003204 | rno-miR-409a-5p | 7 | __...... | 2 | 75 |
| MIMAT0002072 | ptc-miR476b | 1 | ......__ | 6 | 75 |
| MIMAT0001886 | dre-miR-459-5p | 3 | _......_ | 8 | 75 |
| MIMAT0001638 | hsa-miR-409-5p | 7 | __...... | 2 | 75 |
| MIMAT0004746 | mmu-miR-409-5p | 7 | __...... | 2 | 75 |
| MIMAT0015103 | cel-miR-61-5p | 8 | __...... | 3 | 75 |
