| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | tatcggaa | 8 | ||
| MIMAT0018160 | pab-miR947 | 1 | ........ | 8 | 100 |
| MIMAT0004835 | ebv-miR-BART18-3p | 1 | ........ | 8 | 100 |
| MIMAT0036482 | tch-miR-9771c | 1 | _....... | 7 | 87 |
| MIMAT0035531 | bdi-miR2118a | 8 | _....... | 2 | 87 |
| MIMAT0034468 | eca-miR-8939 | 7 | _....... | 1 | 87 |
| MIMAT0033949 | atr-miR8558b | 8 | _....... | 2 | 87 |
| MIMAT0033877 | atr-miR8590 | 8 | _....... | 2 | 87 |
| MIMAT0025339 | pde-miR947 | 2 | _....... | 8 | 87 |
| MIMAT0018606 | ame-miR-3737 | 2 | _....... | 8 | 87 |
| MIMAT0016948 | rlcv-miR-rL1-24-3p | 1 | ......._ | 7 | 87 |
| MIMAT0005007 | pta-miR947 | 2 | _....... | 8 | 87 |
| MIMAT0004388 | cre-miR906-3p | 7 | ......._ | 1 | 87 |
| MIMAT0035764 | tae-miR9654b-3p | 8 | .t...... | 1 | 87 |
| MIMAT0037295 | ame-miR-9890 | 2 | __...... | 7 | 75 |
| MIMAT0037144 | ata-miR5181-5p | 6 | _......_ | 1 | 75 |
| MIMAT0037075 | ssc-miR-9856-3p | 8 | __...... | 3 | 75 |
| MIMAT0035655 | bra-miR9552b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035653 | bra-miR9552a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035254 | gsa-miR-1175-5p | 2 | __...... | 7 | 75 |
| MIMAT0035204 | dme-miR-9370-3p | 7 | ......__ | 2 | 75 |
| MIMAT0034933 | efu-miR-127 | 1 | _......_ | 6 | 75 |
| MIMAT0033837 | atr-miR8562b | 1 | __...... | 6 | 75 |
| MIMAT0033836 | atr-miR8562a | 1 | __...... | 6 | 75 |
| MIMAT0033830 | atr-miR8558a | 7 | __...... | 2 | 75 |
| MIMAT0033402 | str-miR-87a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030271 | bdi-miR7762-3p | 2 | __...... | 7 | 75 |
| MIMAT0029995 | mtr-miR7697-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026424 | sbi-miR6226-5p | 3 | _......_ | 8 | 75 |
| MIMAT0026382 | bma-miR-5881a | 2 | _......_ | 7 | 75 |
| MIMAT0025540 | bta-miR-6522 | 1 | __...... | 6 | 75 |
| MIMAT0027272 | ppe-miR482a-3p | 7 | __...... | 2 | 75 |
| MIMAT0024566 | cca-miR6118-3p | 6 | __...... | 1 | 75 |
| MIMAT0021119 | hsa-miR-5188 | 2 | _......_ | 7 | 75 |
| MIMAT0020705 | bdi-miR5181b | 6 | _......_ | 1 | 75 |
| MIMAT0020224 | dme-miR-4986-3p | 3 | _......_ | 8 | 75 |
| MIMAT0020032 | sko-miR-4826-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019614 | pma-miR-4581 | 3 | __...... | 8 | 75 |
| MIMAT0018316 | gma-miR4400 | 2 | __...... | 7 | 75 |
| MIMAT0018871 | tca-miR-3886-3p | 1 | ......__ | 6 | 75 |
| MIMAT0018683 | tca-miR-3827-3p | 6 | _......_ | 1 | 75 |
| MIMAT0018040 | vvi-miR3634-3p | 7 | __...... | 2 | 75 |
| MIMAT0017987 | hsa-miR-3610 | 3 | _......_ | 8 | 75 |
| MIMAT0017727 | aly-miR3446-5p | 2 | __...... | 7 | 75 |
| MIMAT0012868 | hvt-miR-H15-5p | 1 | __...... | 6 | 75 |
| MIMAT0026754 | oan-miR-1420c-5p | 7 | _......_ | 2 | 75 |
| MIMAT0001415 | oar-miR-127 | 1 | _......_ | 6 | 75 |
